Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10o01
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    29   0.94 
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   1.2  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   2.2  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   3.8  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   5.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.0  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   6.6  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.8  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 284 SETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNA 463
           S++ I   P  +    +Y F++   +     ++L  F  +P DG R N+   V A     
Sbjct: 638 SDSVISAVPPAEYASRFYKFVESSIKPTL--LVLKPFPLKPQDGQRVNKQQSVNAGNVRT 695

Query: 464 LNKY 475
            NK+
Sbjct: 696 NNKH 699


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 26/92 (28%), Positives = 42/92 (45%)
 Frame = +2

Query: 281 SSETFIKTNPMCDLNCIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDN 460
           SS T  + N + D++    ++  EK R      LLS+F K+  +    N++ DV+ E  +
Sbjct: 370 SSPTVSRANSVIDVD----AYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLD 425

Query: 461 ALNKYKTRLEAIKKILREKRAKMKTLESEGKP 556
             N+    L   KK+  E     K + SE  P
Sbjct: 426 NNNESDIGLTVKKKV--ENGNAWKQIFSERAP 455


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 676 VIVWNIYFINVNDCINVI--IRLGYLVFLRELNPSY 575
           V++   YF+N      VI  IR GYL+  R  NPSY
Sbjct: 163 VLLAACYFMNTTPSRLVINLIRSGYLILKRFANPSY 198


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 335 YSFIKEKFRIAFNGILLSYFTKRPNDGNRGNE-SVDVTAEKDNALNKYKTRL 487
           Y+ ++ + R+  + +L ++  + PN  +     S  VTA+ +NAL KYK+ +
Sbjct: 90  YTVVEPRLRLKLDQLLATWKQRPPNSSSLEPVFSPIVTAKIENALLKYKSTI 141


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 416 NRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTL 538
           N  N    + + K   +NK K + E +KK ++E  A  KT+
Sbjct: 61  NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTV 101


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 116 KMALKTGLMEITSNIYKTKMIGAFKRNEDILS-RNFYKDI 232
           +  L  G++E+T+  +  ++I   KRN D L  R F+K++
Sbjct: 441 RKCLLQGVIELTNLGHNLELINFIKRNGDPLEWRKFFKNV 480


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 167 TKMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEK 280
           +++IG   RNE    + +Y D++  + Q ++L+    K
Sbjct: 43  SRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYK 80


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = +2

Query: 152 SNIYKT--KMIGAFKRNEDILSRNFYKDINIEQHQNYLLKEETEKSSETFIKTNPMCDLN 325
           +N+ K   K++G+  R+ D+   N Y    ++Q  N  LK   + + E ++  + M DL 
Sbjct: 184 ANVLKAGKKLLGSASRDYDVNPAN-YSTHYLQQLSN--LKSRLDLAGE-YLDDSIMNDLG 239

Query: 326 CIYYSFIKEKFRIAFNGILLSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKI 505
               S  K     +      S    +P D    +E+V ++A + NAL +   +++  +K+
Sbjct: 240 DNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNALKRKARQMKNSQKV 299


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 731 TTICTVCYRYIKQFNKMLSYSVEYLFY 651
           T +CT  Y Y    N MLS  + Y F+
Sbjct: 159 TALCTGAYGYKGSINGMLSALIAYRFF 185


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 383 LSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNK 562
           + YF +R  +     +S   T++ ++++NK + ++E  K+   E+  K K   SE  P +
Sbjct: 65  VEYFRQRKEELESHVDSEIETSKDESSVNKVEEKVEEFKEDNVEQEIKQKRSLSE-SPQE 123

Query: 563 S 565
           S
Sbjct: 124 S 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,151
Number of Sequences: 5004
Number of extensions: 58208
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)