Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10o01
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_42446| Best HMM Match : Skp1_POZ (HMM E-Value=4.7) 31 0.76
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.3
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_33163| Best HMM Match : RIIa (HMM E-Value=2.8) 28 9.4
SB_15730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 383 LSYFTKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNK 562
L+ KR +G E D + N + K ++ IKK LRE+ A +KT E E K K
Sbjct: 175 LAEIEKRRLEGKLSYE--DAILARQNLIKDNKQKVSEIKKQLRERLALLKTAEEEEKEKK 232
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 425 NESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESE 547
NESVD +KD +L + +L + + L+E R ++K E++
Sbjct: 976 NESVDELQQKDKSLKEKDGKLAELDQALKESRKEIKNREAQ 1016
>SB_42446| Best HMM Match : Skp1_POZ (HMM E-Value=4.7)
Length = 140
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +2
Query: 428 ESVDVTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNKS*FSIARVQFS*KD* 607
E + AEK + K+K + ++++L E+R K+ ++ +G+P K R+ + KD
Sbjct: 65 EIQQLEAEKVEKVFKWKKWKDKVEEVLNEQRGKLDNVKKKGEPTKRQDIDERILIT-KD- 122
Query: 608 ITKSDNDIDTVININK 655
S DID I I K
Sbjct: 123 YEASKPDIDDGIAIAK 138
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KRNEDILSRNFYKDINIEQHQNYLLKEETEKSSET-FIKTNP 310
K+ EDI + ++NI + QNYLL T ++ T F+K NP
Sbjct: 1251 KKGEDISFDQLFMNLNITE-QNYLLAVSTSINTPTVFLKRNP 1291
>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 943
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KRNEDILSRNFYKDINIEQHQNYLLKEETEKSSET-FIKTNP 310
K+ EDI + ++NI + QNYLL T ++ T F+K NP
Sbjct: 732 KKGEDISFDQLFMNLNITE-QNYLLAVSTSINTPTVFLKRNP 772
>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 440 VTAEKDNALNKYKTRLEAIKKILREKRAKMKTLESEGKPNK 562
V EKDN + + + + +K L +K + + TLE E K NK
Sbjct: 547 VCHEKDNIIAEKEEEIYLKEKELEDKESAIHTLEEEIKENK 587
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KRNEDILSRNFYKDINIEQHQNYLLKEETEKSSET-FIKTNP 310
K EDI D+NI + QNYLL + ++ T F+K NP
Sbjct: 6255 KEGEDITFDQLLVDLNITK-QNYLLAVSSSINTPTVFLKRNP 6295
>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 425 NESVDVTAEKDNALNKYKTRLEAIK---KILREKRAKMKTLESEGKPNK 562
+E +T+E+DN K + LE IK KIL EK K K ++S+ N+
Sbjct: 68 DEVPQLTSEEDNVDPKIREGLEKIKKLDKILGEKVKKEKEVKSQRHMNE 116
>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 263 KEETEKSSETFIKTNPMCDLNCIYYS 340
KE +K++E P+CD++C Y+S
Sbjct: 367 KEICDKANEKLFYMCPLCDVDCSYWS 392
>SB_33163| Best HMM Match : RIIa (HMM E-Value=2.8)
Length = 511
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 86 KQFHKHLVFVKMALKTGLMEITSNIYKTKMIGAFKRNEDI--LSRNFYKDINIEQHQNYL 259
KQ H++++ K+ K + + NI + + K N+++ +RNF + + + + +L
Sbjct: 39 KQLHQNVLQGKVRSKE-VEILLQNIAQLRKDIKAKSNDNLTKFTRNFECFLKLREEREFL 97
Query: 260 LKEETEKSSETF 295
+ E E+ E+F
Sbjct: 98 ISREIEREEESF 109
>SB_15730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 368 FNGILLSYF-TKRPNDGNRGNESVDVTAEKDNALNKYKTRLEAIKKILRE 514
FN + +F TK+ + N+S D T + ++ T+ KK LRE
Sbjct: 3 FNAAMHVHFRTKKREHVTKANDSYDATLNRQRKRSRLNTKTTLRKKTLRE 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,141,119
Number of Sequences: 59808
Number of extensions: 374141
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -