Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n21
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   2.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   3.5  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   4.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.1  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.1  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.1  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   6.1  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +3

Query: 66  LVDEEEPASSAFAPDGNYIP--RIIFLSPEGSVDHDIYNEDGSSQHKYFYSKPEQIVKSM 239
           L+  +E A SA + D   +   +   LS  G V  D+  ++G  +       PE+ V+S 
Sbjct: 261 LIPPKEDADSAASSDAAELETDKSSNLSSNGEVKSDLKQDNGKEE-------PEKEVEST 313

Query: 240 RKILEKYKHEQFDA*KIPN 296
             IL+ +K    +   +PN
Sbjct: 314 PSILQNFKVSLVNVENVPN 332


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 66  LVDEEEPASSAFAPDGNYIPRIIFLSPEG-SVDHDIYNEDGSSQHKYFYSKPEQIVKSMR 242
           L+D+EE   +         P I+F S EG S + D+++  G   +     KP    K ++
Sbjct: 188 LMDDEERKMTICGTPNYIAPEILFNSKEGHSFEVDLWSA-GVVMYALLIGKPPFQDKEVK 246

Query: 243 KILEKYKHEQF 275
            I  K K   +
Sbjct: 247 TIYRKIKANSY 257


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 338 YF*KICIFSIHRMWIRYLLSIELFVFVFFEYFSHR 234
           +F  + +F + R W+   L     V++F + FSHR
Sbjct: 188 FFSALLVFLVSRSWVAGQLGQAPEVWLFNQIFSHR 222


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 296  IRYLLSIELFVF-VFFEYFSHRFHDLFGFAVKIFVLAAPVFVVDVMVNRS 150
            I Y ++I + V+ + F YF H F ++F   V +  L   + ++    NRS
Sbjct: 1309 ICYTINICVKVYGLSFYYFFHSFWNMFDVVVTLGSLTCNIAILAKFENRS 1358


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 368 SLFWLSMNRIYF*KICIFSIHRMWIRYLL 282
           S FW  + R YF    IF+ +  WI  ++
Sbjct: 482 SAFWPVIYRFYFISALIFTSYSFWIPQII 510


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 167  VMVNRSFWRQEYYPGYVIS 111
            V+VN S  +++YYP Y+++
Sbjct: 945  VLVNDSKSKEKYYPSYIVA 963


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 66  LVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 179
           L+DE        A  G + PRII   P+  +  D+Y E
Sbjct: 37  LIDETSIILELGAGTGKFTPRIIASHPKEIIAVDVYPE 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,812
Number of Sequences: 5004
Number of extensions: 42198
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)