Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n21
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 30 1.1
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798... 29 2.6
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 27 6.1
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 27 6.1
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 27 6.1
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 27 8.1
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 27 8.1
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 27 8.1
03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797... 27 8.1
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 174 CRCHGQPILLA-TGILSWVC 118
CRCHG+PI LA T W+C
Sbjct: 117 CRCHGRPIDLANTNKAKWMC 136
>03_03_0141 +
14779557-14779600,14779686-14779749,14779827-14779860,
14780308-14780438,14780655-14780728,14780869-14780947,
14781054-14781143,14781401-14781474,14782317-14782404,
14782654-14782780,14782864-14782968,14783446-14783569,
14783651-14783702,14784150-14784255,14784770-14784831,
14784912-14784956,14785527-14785625,14785772-14785924
Length = 516
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -1
Query: 320 IFSIHRMWIRYLLSIELFVFVFFEYFSHRFHDLFGFAVKIFVLAAPVFVVDVMVN 156
++SI W YL+ + L +FF+ S + VK++VLAA +++ ++++
Sbjct: 299 VYSIFGYWGMYLIGVSLGYNLFFDN-SSKGKSRSSQVVKVWVLAASFWIMAIILD 352
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 278 IELFVFVFFEYFSHRFHDLFGFAVKIFVL 192
IELF F+ + H+F+ +FGF +FV+
Sbjct: 509 IELF-FILTSIWLHQFYYIFGFLFLVFVI 536
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 78 EEPASSAFAPDGNYIPRI---IFLSPEGSVDHDIYNEDGSSQHKYFYSKP 218
E P +++ + G+ P ++S + S+DH+I E GS+Q+ + P
Sbjct: 461 EMPRNNSHSSGGHATPPSAHGFWMSQQNSIDHNISRESGSTQNDWKSKAP 510
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 18 SSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIP 125
+S+ L+ + HF+ +NL ++E P FA D Y+P
Sbjct: 254 ASVQLRMPNLHFIPVNLGNKENPGLVKFA-DDVYLP 288
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 278 IELFVFVFFEYFSHRFHDLFGFAVKIFVLAAPVFVVDVMVNRSF 147
IE++ FVF +++++ + ++GF + +FV+ V + +V F
Sbjct: 466 IEMY-FVFTSFWNYKVYYVYGFMLLVFVILLIVTICVTIVGTYF 508
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 278 IELFVFVFFEYFSHRFHDLFGFAVKIFVLAAPVFVVDVMVNRSF 147
IE++ FVF +++++ + ++GF + +FV+ V + +V F
Sbjct: 461 IEMY-FVFTSFWNYKVYYVYGFMLLVFVILIIVTICVTIVGTYF 503
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 278 IELFVFVFFEYFSHRFHDLFGFAVKIFVL 192
IELF F+ + H+F+ +FGF +F++
Sbjct: 459 IELF-FILTSIWLHQFYYIFGFLFLVFII 486
>03_02_0871 -
11978725-11978986,11979265-11979422,11979501-11979705,
11979797-11980086,11980539-11980692,11980793-11980881,
11981567-11981634,11982082-11982352
Length = 498
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 192 QHKYFYSKPEQIVKSMRKILEKYKHEQ 272
+ YFY+ P + + + RK EK KH +
Sbjct: 471 EEDYFYANPHECLGAARKRREKLKHTE 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,187
Number of Sequences: 37544
Number of extensions: 227437
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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