Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n21
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)               91   6e-19
SB_37688| Best HMM Match : Thioredoxin (HMM E-Value=5)                 91   6e-19
SB_25045| Best HMM Match : DUF638 (HMM E-Value=3.2)                    66   1e-11
SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)                29   2.1  
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)       28   3.6  
SB_9466| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_16623| Best HMM Match : YHS (HMM E-Value=6.4)                       27   6.3  

>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
          Length = 213

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   KPKFASSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNED 182
           KPKFA+S +L  +SK FVM+N+ D+EEP+ S F  DG Y+PRI FL+ +G VD  IYNE 
Sbjct: 138 KPKFAASEELAEMSKKFVMVNVEDKEEPSGSQFVVDGEYVPRIYFLNSKGEVDESIYNEG 197

Query: 183 GSSQH-KYFYSKPEQ 224
              +H KY+Y  PE+
Sbjct: 198 TKHRHVKYYYESPEE 212



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = +3

Query: 3   KPKFASSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNED 182
           +PKFA S ++  LSK FVM++L + EEP    F  DG YIPRI F+ P+  V  D+ N  
Sbjct: 16  RPKFAESKEVAQLSKKFVMVHLQENEEPDGDEFRVDGRYIPRIYFMDPDSVVLKDVVNAH 75

Query: 183 G-SSQHKYFYSKPEQIVKSMRKILEKYK 263
           G   + KY+Y K  +IV+SM+++L+K K
Sbjct: 76  GRHKETKYYYGKVSEIVRSMKQVLKKLK 103


>SB_37688| Best HMM Match : Thioredoxin (HMM E-Value=5)
          Length = 119

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   KPKFASSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNED 182
           KPKFA+S +L  +SK FVM+N+ D+EEP+ S F  DG Y+PRI FL+ +G VD  IYNE 
Sbjct: 44  KPKFAASEELAEMSKKFVMVNVEDKEEPSGSQFVVDGEYVPRIYFLNSKGEVDESIYNEG 103

Query: 183 GSSQH-KYFYSKPEQ 224
              +H KY+Y  PE+
Sbjct: 104 TKHRHVKYYYESPEE 118


>SB_25045| Best HMM Match : DUF638 (HMM E-Value=3.2)
          Length = 432

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   KPKFASSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNED 182
           K + AS  +L +  K FVM+N++D+EEP      PDG Y+PR++FL   G V  + +NE 
Sbjct: 203 KERIASDKNLGDWGKKFVMVNVIDDEEPKDKQLQPDGQYVPRVLFLDSNGKVLDEFWNEG 262

Query: 183 GSSQH-KYFYSKPEQ 224
              +H K++Y   ++
Sbjct: 263 TDYKHVKHYYQNGDE 277



 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   KPKFASSIDLQNLSKHFVMINL 68
           K KF SS D+Q+LS++F+++NL
Sbjct: 410 KAKFNSSKDIQDLSRNFILVNL 431


>SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  FVMINLVDEEEPASSAFAPDGNYIPRIIFL 140
           F+MIN+ D+EEP    F  DG Y PR+ FL
Sbjct: 2   FIMINIADDEEPKDDRFDVDGKYYPRVYFL 31



 Score = 30.7 bits (66), Expect = 0.67
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 147 EGSVDHDIYNED-GSSQHKYFYSKPEQIVKSMRKILEKYK 263
           +G V   I+N +    ++K+ Y   EQ++KSM++ LEK K
Sbjct: 204 DGEVLKSIHNTELDYVKYKFAYGDEEQVLKSMKQCLEKVK 243


>SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 6   PKFASSIDLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDG 185
           P+   +  +Q  S   +  +++  E+ AS+A + +G     + ++  E + DH +Y+  G
Sbjct: 190 PQLQQAASIQPGSAQIITASVISAEDLASAAISKEGFTTSEVQYV--EATADHSLYSNGG 247

Query: 186 SSQHKYFYS 212
           S  + Y Y+
Sbjct: 248 SGSNAYHYN 256


>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
          Length = 646

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 210 CKNICVGCSRLRCRCHGQPILLAT 139
           C+++C  C + R RC  QP  L T
Sbjct: 160 CRDVCDRCGKARWRCESQPESLGT 183


>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
          Length = 271

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 173 VDVMVNRSFWRQEYYPGYVISIWSKSAASGFFLIDQINHDEML 45
           VD   +++   Q    GY  S WSK  +   FL D+ +HDE +
Sbjct: 23  VDCTESKNTCNQRDIKGYPTSDWSKDDSKVVFLTDE-SHDEFI 64


>SB_9466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 160 TMTSTTKTGAANTNIFTANPNKS*NL*EKYSKNTNTNNS 276
           T T+TT   AA T   T     + N   +Y KN N NN+
Sbjct: 81  TTTTTTTAAAAATTTKTKQQEFNNNNKNRYHKNNNNNNN 119


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 192 QHKYFYSKPEQIVKSMRKILEKYKHEQFDA*KIPNPHSMYGKYA 323
           +H Y + +PEQ + S  +IL  Y  +  D  + P+  S  G  A
Sbjct: 231 EHSYVFVRPEQRLTSKEEILRLYDSKSDDYLRSPSHDSGIGSAA 274


>SB_16623| Best HMM Match : YHS (HMM E-Value=6.4)
          Length = 185

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 102 APDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYSKPEQIVKSMRKILEKYKHEQ 272
           APD  YI   +F +P G++D        SS       KP    +S R+  E+Y  EQ
Sbjct: 125 APDCGYI---LFANP-GAIDDTYLPPKKSSSKMSSVKKPATYYESCRQQFERYLQEQ 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,705
Number of Sequences: 59808
Number of extensions: 293440
Number of successful extensions: 1330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)