Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n21
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical...    71   5e-13
AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical ...    69   2e-12
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   0.78 
AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical...    29   2.4  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        28   3.2  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    28   3.2  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    28   3.2  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical ...    27   5.5  
U55369-2|AAK52183.2|  526|Caenorhabditis elegans Udp-glucuronosy...    27   7.3  
U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical
           protein Y57A10A.23 protein.
          Length = 186

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +3

Query: 33  QNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGS-SQHKYFY 209
           + LS+HFVM+N  D++EP    + PDG YIPR++FL   G +  +  N+      + Y+Y
Sbjct: 85  KKLSEHFVMVNTEDDDEPFEEEYRPDGKYIPRLLFLDKNGDLLQEFKNKKAEYKNYAYYY 144

Query: 210 SKPEQIVKSMRKILEKY 260
           S P  I+ SM+ +L+ +
Sbjct: 145 SSPADILNSMKDVLKHF 161


>AC006642-4|AAF39830.1|  257|Caenorhabditis elegans Hypothetical
           protein F49H12.5 protein.
          Length = 257

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/74 (43%), Positives = 46/74 (62%)
 Frame = +3

Query: 39  LSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYSKP 218
           LS+ FVM+N+ D+EEP    ++PDG YIPRI+FL  +G+      NE     +KYFY  P
Sbjct: 84  LSRKFVMVNVEDDEEPEDPKYSPDGGYIPRILFLDTDGN-PLKTNNERKYKNNKYFYPLP 142

Query: 219 EQIVKSMRKILEKY 260
            QI+  M + L ++
Sbjct: 143 AQIIDGMERALLEF 156


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 75   EEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYFYS-KPEQIVKSMRKIL 251
            E E  +  FAP GN+    +F   EG+      N D  +Q   F++  PE++VK    + 
Sbjct: 1005 EVETPNRVFAPTGNHFIHDVFSQIEGA------NMDSENQQNIFFNFPPEKLVKKPPVVP 1058

Query: 252  EKYKHEQ 272
            ++   EQ
Sbjct: 1059 KEVVQEQ 1065


>AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.7 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 150 GSVDHDIYNEDGSSQHKYFYSKPEQIVKSMRKILEKYKHEQFDA*KIPNPHSMYGKYANL 329
           G   H ++N    S H YFYS  + +   M K+L   K    D   +   HS+ G  A++
Sbjct: 104 GRPKHKLHN--AGSVHYYFYSALKTMWSPMEKLLRGLKDSLPDHKIVFTGHSLGGAIASI 161

Query: 330 LEIYAIH*QPE 362
                +   PE
Sbjct: 162 ASTVFVRNFPE 172


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 179
           +M  L+DE +  +   A +G   PR I L+P   +   IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 179
           +M  L+DE +  +   A +G   PR I L+P   +   IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  VMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNE 179
           +M  L+DE +  +   A +G   PR I L+P   +   IYNE
Sbjct: 610 IMARLIDENDLNT---AGEGGCYPRCIILTPTRELTDQIYNE 648


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 184 GAANTNIFTANPNKS*NL*EKYSKNTNTNNSML 282
           G ANTN +  N N + N  + YS +TN  N+ L
Sbjct: 286 GNANTNNYNNNNNYNNNGQQTYSTSTNWQNNQL 318


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 30  LQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQH 197
           L+N +K  V+I L+D + P    +  D + + R+  +  +G   + +    G  QH
Sbjct: 261 LENQAKSGVLIKLIDCQPPVMPEYDYDADELERLGLIQRQGLDMNTLNGGSGGVQH 316


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 73  MRKNPLAALLLQMEITYPG*YSCRQKDRLTMTSTTKTGAAN-TNIFTANP 219
           MRKN    L++Q+E  Y     C Q+  L + +  K    N   +FT NP
Sbjct: 171 MRKNAGPVLMVQIEHFYGALGICDQQYLLQLANMAKENLGNDVVLFTVNP 220


>AF016437-3|AAB65885.2|  405|Caenorhabditis elegans Hypothetical
           protein F13H6.4 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 27  DLQNLSKHFVMINLVDEEEPASSAFAPDGNYIPRIIFLSPEGSVDHDIYNEDGSSQHKYF 206
           DL+  +    M+  VDE E   ++  P+ +     + L P+G   +D   E+    HK F
Sbjct: 165 DLRKEAPKKQMMTGVDEYEGVIASMNPEFSPADAGLALFPKGVYGNDT-AENPEEMHKLF 223

Query: 207 YSK-PEQIVKSMRKILEKYKHEQF 275
           Y K  E + KS    ++K   E F
Sbjct: 224 YEKYVEGVDKSDDSAMKKRLCEAF 247


>U55369-2|AAK52183.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein48 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 147 EGSVDHDIYNEDGSSQHKYFYSKPEQIVKSMRKILEKYKHEQFDA 281
           + S+   I+N D       + +  E++V + ++++EK K E+FDA
Sbjct: 96  QSSIWSKIFNTDSDPYQDEYTNMCEEMVTN-KELIEKLKKEKFDA 139


>U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK430.2 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 30  LQNLSKHFVMINLVDEEEPASS 95
           +Q+L KHF  IN++ EEE  ++
Sbjct: 62  VQSLQKHFKNINIIGEEEDTTA 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,582
Number of Sequences: 27780
Number of extensions: 229040
Number of successful extensions: 678
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)