Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n20
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 33 0.052
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 2.6
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 26 4.5
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 26 4.5
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 4.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 6.0
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.0
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 32.7 bits (71), Expect = 0.052
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 91 KSQNNNKYLPSFRIHAEESDHYDGVKSHKDNESSNL---VAFLVENVKKIFDDLHETTSI 261
K + L R+ E+ + Y+G++S D +SNL + L N+K TSI
Sbjct: 362 KDMQEKEQLKGLRLLPEDKEEYEGLRSEADKLNSNLLFKLQTLNRNIKVTSQSKDSLTSI 421
Query: 262 IDRSFEKLDTLSE 300
+ K+ +L E
Sbjct: 422 VGDLESKIKSLHE 434
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1
Query: 79 TSTGKSQNNNKYLPSFRIH----AEESDHYDGVKSHKDNESSNLVAFLVENVKKIFDDLH 246
+S+ S N N+ +P I +E + + +K KD+ S N + + + F D+H
Sbjct: 71 SSSEPSDNTNRLVPVVIIDNNTPKKEESNAEKLKLDKDSSSVNYENQISKPLIT-FSDIH 129
Query: 247 ETTSIIDRSFEKLDTLSEV 303
ET ++ +K D+ +EV
Sbjct: 130 ETVNVPFLCLDKHDSKNEV 148
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 166 KSHKDNESSNLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTLSEVQ 306
KS K+N ++ ++E V+K LH+ T ID+ + L L+ Q
Sbjct: 522 KSPKNNLLISMDESVIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQ 568
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 628 YHMRYTIDVDVQIFLIAIHTTSYNLYYSQHDSL 530
+H+R+T ++ + L+A T NL+Y + +L
Sbjct: 451 FHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTL 483
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 4.5
Identities = 32/145 (22%), Positives = 56/145 (38%)
Frame = +1
Query: 169 SHKDNESSNLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTLSEVQTQTLXXXXXXXXXX 348
S +D+ S V EN ++ +DL+ + + + EVQ T+
Sbjct: 18 SQEDDSSKKFVKDDSENSEEELEDLNSEDEFYQSNSSEDEIEEEVQESTIADDIADILNQ 77
Query: 349 INVEKSSEATTYNTKIAGKVDKAYIKVTKRRKVNDATTINYQIHLSRDLMYHKTSSLAEQ 528
V ++ E T ++ K KA K +K + T + L ++++ TS +A
Sbjct: 78 -QVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVAV- 135
Query: 529 LTNRAENNTNCNLLYESQLERFAHR 603
AE +E +L R A R
Sbjct: 136 ---NAE-TAKALFTHERELRRIARR 156
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 544 QHDSLVAQLEMKFCDTLNRVINVSDNLL 461
Q DSL+ ++ + D ++ V+N +NL+
Sbjct: 363 QEDSLMEDEDLSYMDDMSNVVNEDENLI 390
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/52 (21%), Positives = 30/52 (57%)
Frame = +1
Query: 139 EESDHYDGVKSHKDNESSNLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTL 294
E ++ + +++++D + + + + EN+ + +L ETTS + + + +TL
Sbjct: 138 EATEGKNVLETYEDRSTFSCLCAIAENISSLLVNLGETTSQVIKVLNQKNTL 189
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 193 NLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTL 294
N+VA L E+ K + ++L +I EK++TL
Sbjct: 1230 NMVALLNESNKSLRENLERNEEVITELREKIETL 1263
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 319 LEFVFVPPRVYLIFQMIYLLLK*FRV 242
++F+ +PP V+L+F Y L FR+
Sbjct: 109 IQFIALPPTVFLLFFKFYSRLFFFRI 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.129 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,501
Number of Sequences: 5004
Number of extensions: 41276
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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