Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n20
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 32 0.38
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505... 32 0.50
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 31 0.67
07_03_1188 + 24671022-24672482 29 4.7
10_08_0545 - 18673640-18674249,18674579-18674934 28 6.2
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 28 6.2
03_01_0596 + 4398920-4398982,4399395-4399797,4400234-4400340,440... 28 8.2
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 28 8.2
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 SSLAEQLTNRAENNTNCNLLYESQLERFAHRRRSCIAC-DNIMAKDCS 651
S+L R ++ NL+ E++ + + R+++CI C +N+ KDCS
Sbjct: 109 SNLLVDTKGRRQSRRIKNLMDEAEAKDHSRRKKACILCGENLAHKDCS 156
>03_02_0021 -
5049705-5049713,5049744-5049770,5049877-5049940,
5050019-5050806,5050888-5051046,5051778-5052419
Length = 562
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +1
Query: 61 TIFAFRTSTGKSQNNNKYLPSFRIHAEESDHYDGVKSHKDNESSNLVAFLVENVKKIFDD 240
TI++ R+S+GK +K L S ++ + E+ D + K+ E + F + K D
Sbjct: 356 TIYSSRSSSGKDLYQDKQLDSAKLKSSEAAEPDHMVIVKEEEDKKIGPFSRPSAKTETHD 415
Query: 241 LHE---TTSIIDRSFEKLDTLSEVQTQT 315
L++ T ++ F L +T+T
Sbjct: 416 LNQAIWTPNVSSTPFSSSPKLDHDKTET 443
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 127 RIHAEESDHYDGVKSHKDNESSNLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTLSE 300
R +AE + K DN V +++ + D+L +S++ SF K+DT +E
Sbjct: 176 RSYAEMENVIARTKRESDNAKKYAVQGFSKSLLDVADNLSRASSVVKESFSKIDTSNE 233
>07_03_1188 + 24671022-24672482
Length = 486
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 403 KVDKAYIKVTKRRKVNDATTINYQIHLSRDLMYHKTSSLAEQLTNR 540
K+DK Y+K K +KV T+ ++ L +Y S ++ R
Sbjct: 437 KIDKKYVKAKKEKKVKKRLTLPEKMRLKSKRLYKLRMSFVKKPKRR 482
>10_08_0545 - 18673640-18674249,18674579-18674934
Length = 321
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 475 IHLSRDLMYHKTSSLAEQLTNRAENNTNCNLLYESQLERFAH-RRRSCIACDNIMAKD 645
+++S L++ ++ Q+ + ++ T L S+L F H + RSC+AC +MA +
Sbjct: 226 LNISHCLLFEIVANGRRQVIHELDDQT---LQKASRLREFHHCQSRSCLACQRMMADE 280
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 674 GTSLFLGSLQSFAIILSHAIHDRRRCANLSNCDSYNKLQFVLFSARFVSCS 522
G SL +S IL H + D+RR S + + + F R +CS
Sbjct: 434 GDSLNRNMWESLVCILRHGVRDKRRMYEASGRNQFKTRGYYSFRFRDYNCS 484
>03_01_0596 +
4398920-4398982,4399395-4399797,4400234-4400340,
4400458-4400523
Length = 212
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 355 VEKSSEATTYN-TKIAGKVDKAYIKVTKRRKVNDATTINYQIHLSRDLMYHKTSS 516
V +S+E + N +VD K KRRK+ A T NYQ+ + D ++ T +
Sbjct: 151 VGESTEVSDQNFADDEAEVDAESSKACKRRKLRSALTRNYQV-VPSDKLFASTKA 204
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 27.9 bits (59), Expect = 8.2
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Frame = +1
Query: 361 KSSEATTYNTKIAGKV-------DKAYIKVTKRRKVNDATTINYQIHLSRDLMYHKTSSL 519
K SEA+ + K+ + +K ++ T +R + D + ++ + + H +SL
Sbjct: 409 KESEASLNDLKVTSNMQIENMAMEKRQLESTIKRLMLDLEKEKGKNNILSEQIIHLETSL 468
Query: 520 AEQLTNRAENNTNCNLL------YESQLERFA-----HRRRSCIACD--NIMAKDCSDPK 660
E + EN +N N+L +E ++ R RS D N++ + SD +
Sbjct: 469 DENKQKQLENISNTNILADTTKSHEKKIRELLKQLEDERSRSASMNDHLNVLQQQLSDAQ 528
Query: 661 NKLVPSILCERE 696
N +I CE E
Sbjct: 529 NYFQKNIACELE 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.129 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,278
Number of Sequences: 37544
Number of extensions: 211844
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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