Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n20
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52574| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 29   2.7  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)           28   6.3  
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)                     28   8.4  
SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)                28   8.4  

>SB_52574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 16  SCSTSMKISGISIVLTIFA-FRTSTGKSQNNNKYLPSFRIHAEESDHYDGVKSHKDNESS 192
           S  T+   S + ++ ++F+ F +S+ +  NN+    S  +H E S   D   S  D+ES+
Sbjct: 139 SDDTNHTQSSLGVISSLFSSFTSSSTEEDNNSNSDTSTGVHTEHSSEIDNQSSQSDSESA 198


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 596  ANLSNCDSYNKLQFVLFSARFVSCSARDEV 507
            + L      NKL  VLF AR V CSAR  +
Sbjct: 1035 SQLKQFSRLNKLSLVLFPARVVICSARHNI 1064


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 139  EESDHYDGVKSHKDNESSNLVAFLVENVKKIFDDLHETTSIIDRSFEKLDTLSEVQTQTL 318
            +E D  D       +E S  V  L   VKK  DD      ++D   E+ DTL + +   L
Sbjct: 1653 DEKDKLDDENKQLLDEKSREVTDLKGEVKKAQDDADSVKRLVDAIIEENDTLKQSEHDLL 1712



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 157 DGVKSHKDNESSNLVAFLVENVKKIFDDLHE 249
           D  + H D++ S+L+A L + ++ +   LHE
Sbjct: 324 DSPRDHPDSQGSSLIAKLTDEIEALRKSLHE 354


>SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)
          Length = 612

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 88  GKSQNNNKYLPSFRIHAEESDHYDGVKSHKDNESSN--LVAFLVENVKKIFDDLHETTSI 261
           G   NN +  P+   H +   H+     HK ++S+   L++ LV+ +K    D++E   +
Sbjct: 153 GMQGNNEQQEPTDEQHHKRHHHHHHHHRHKHHKSTTKVLLSLLVDKLK----DIYELDQM 208

Query: 262 IDRSFEKLDTLS 297
                +KLD+L+
Sbjct: 209 KAAKNQKLDSLT 220


>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
          Length = 825

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 157 DGVKSHKDNESSNLVAFLVENVKKIFDDLHE 249
           D  + H D++ S+L+A L + ++ +   LHE
Sbjct: 346 DSPRDHPDSQGSSLIAKLTDEIEALRKSLHE 376


>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
          Length = 583

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 583 IAIHTTSYNLYYSQHDSLVAQLEMKFC 503
           I IHT   +L +  HD+ +AQ E  FC
Sbjct: 328 IDIHTGGVDLKFPHHDNELAQSEAHFC 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.129    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,844
Number of Sequences: 59808
Number of extensions: 281007
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)