Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n20
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.91 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 SFRIHAEESDHYDGVKSHKDNESSN 195
           +F   A +S HYD  K  + NE+ N
Sbjct: 165 TFEPRATDSRHYDRYKEEESNENYN 189


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 607 DVDVQIFLIAIHTTSYNLYYSQHDS 533
           +VD +++ +A+   ++NLYY+   S
Sbjct: 247 EVDNKVYGMALSPVTHNLYYNSPSS 271


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 70  AFRTSTGKSQNNNKYLPSFRIHAEESDHYDGV--KSHKDNESS 192
           AF+T T + +N NK+L    + A  ++ Y GV  K   DN  S
Sbjct: 137 AFKTLTQEPKNTNKFLEKGPV-ALINELYPGVVYKCVSDNGES 178


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 113 YLLLFCDFPVLVLNAKIVKTMLIPL 39
           +L++FC  P +V+N      +L PL
Sbjct: 99  FLMMFCMSPPMVINCYYETWVLGPL 123


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 113 YLLLFCDFPVLVLNAKIVKTMLIPL 39
           +L++FC  P +V+N      +L PL
Sbjct: 65  FLMMFCMSPPMVINCYYETWVLGPL 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.129    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,478
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)