Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n20
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ... 33 0.18
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ... 33 0.18
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ... 31 0.73
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 31 0.97
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 30 1.3
At1g27760.3 68414.m03393 interferon-related developmental regula... 29 2.2
At2g16270.1 68415.m01863 expressed protein and genefinder; expr... 29 3.0
At3g29385.1 68416.m03692 hypothetical protein 28 6.8
>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 481 LSRDLMYHKTSSLAEQLTNRAENNTN--CNLLYESQL--ERFAHRRRSCIACDNIMAKDC 648
L +D +YH+ +AE + NT+ N++ QL + +SCI ++ +DC
Sbjct: 370 LCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDC 429
Query: 649 SDPKNKLV 672
PK +LV
Sbjct: 430 VIPKQQLV 437
>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 481 LSRDLMYHKTSSLAEQLTNRAENNTN--CNLLYESQL--ERFAHRRRSCIACDNIMAKDC 648
L +D +YH+ +AE + NT+ N++ QL + +SCI ++ +DC
Sbjct: 370 LCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDC 429
Query: 649 SDPKNKLV 672
PK +LV
Sbjct: 430 VIPKQQLV 437
>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 535
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 448 NDATTINYQIHLSRDLMYHKTSSLAEQLTNRAENNTNCNLLYESQLERFAHRRRSCIACD 627
N+ +Y++ ++ + +L ++ N C L +++ SC+ CD
Sbjct: 235 NNVEVKSYEVIEEGEIRHFSHEKHNLKLQEESDANNECMLCKACNYPIYSNSFYSCMECD 294
Query: 628 N-IMAKDCSD-PKNKLVP 675
+ I+ K C+D PK K+ P
Sbjct: 295 DFILHKKCADLPKKKIDP 312
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 13 LSCSTSMKISGISIVLTIF-AFRTSTGKSQNNNKYLPSFRIHAEESDHYDGVKSHKDNES 189
LS + + S S + + F +S+G +NNN F+++ ESDH + H N +
Sbjct: 128 LSANYFLNGSSSSQIPSFFLGLSSSSGGCENNNGMENLFKMYGHESDHNHQQQHHSSNAA 187
Query: 190 SNL 198
S L
Sbjct: 188 SVL 190
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 529 LTNRAENNTNCNLLYESQLERFAHRRRSCIACDNIMAKDCS 651
L E + C++ ES+ E F+ ++ +CI CD ++ C+
Sbjct: 492 LNPEEEESAICHICQESKDESFSCKKLNCIECDFVICFKCA 532
>At1g27760.3 68414.m03393 interferon-related developmental regulator
family protein / IFRD protein family contains Pfam
PF05004: Interferon-related developmental regulator
(IFRD); similar to IFR1 protein GI:16580630 [Gallus
gallus]; similar to Interferon-related developmental
regulator 1 (TPA induced sequence 7) (TIS7 protein)
(SP:P19182) {Mus musculus}
Length = 441
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 484 SRDLMYHKTSSLAEQLTNRAENNTNCNLLYESQLERFAHRRRSCIAC 624
S D +Y K SS EQ + N +L YE ++FA C+ C
Sbjct: 52 SLDALYEKRSSTREQALATIVDAFNSDLQYEFVEKKFATLLHQCLHC 98
>At2g16270.1 68415.m01863 expressed protein and genefinder;
expression supported by MPSS
Length = 759
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 565 LLYESQLERFAHRRRSCIACDNIMAKDCSDPKNKLVPS 678
L+ E +R HR +SC++ +++ C D + K V S
Sbjct: 116 LILEDDNKRNHHRAKSCVSFSDVLHTICIDDEKKFVES 153
>At3g29385.1 68416.m03692 hypothetical protein
Length = 218
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 169 SHKDNESSNLVAFLVENVKKI---FDDLHETTSIIDRSFEKLD 288
S++D + S LV E ++K+ F L TTSI+D FE D
Sbjct: 129 SNQDQQHSLLVNAFNEKIQKLESNFQSLERTTSILDIIFEIQD 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.129 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,616
Number of Sequences: 28952
Number of extensions: 191483
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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