Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n19
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             30   1.4  
At5g18240.4 68418.m02143 myb family transcription factor contain...    29   3.2  
At5g18240.1 68418.m02140 myb family transcription factor contain...    29   3.2  
At1g72390.1 68414.m08373 expressed protein                             29   3.2  
At5g46680.1 68418.m05752 pentatricopeptide (PPR) repeat-containi...    27   9.6  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
 Frame = +1

Query: 85   IAVLQSRIEQLEAKLGLSPEIS-IDGQQGDSVTANLLSAAQAINNATAGHEKLH-EAMQM 258
            I +++++I++L  +L LS E   I  Q+ D     + S  +      A    +  +   +
Sbjct: 760  IRIMKAKIDELGWQLELSTEAKEILKQRLDITLDEVCSLKEEKTTCIAKWNAVALQNQSL 819

Query: 259  ASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQKA 432
             + L N +  N +  LQK D  +  VL ++    ++  C+ + K+   ++E EA++KA
Sbjct: 820  EANLQNITHENLIL-LQKIDELESVVLESKSWKTNYETCICEKKELAELMEKEAVEKA 876


>At5g18240.4 68418.m02143 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 94  LQSRI-EQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAM-QMASE 267
           +Q R+ EQLE +  L   I   G+   S+           N   AG E     + ++ S+
Sbjct: 157 VQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSK 216

Query: 268 LN-NYSDPNFVENLQKNDLHKQEVLAAEP 351
           ++ +Y D +F+E  +  +LH Q++    P
Sbjct: 217 VSADYPDSSFLEPKELQNLHHQQMQKTYP 245


>At5g18240.1 68418.m02140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 402

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 94  LQSRI-EQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAM-QMASE 267
           +Q R+ EQLE +  L   I   G+   S+           N   AG E     + ++ S+
Sbjct: 157 VQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSK 216

Query: 268 LN-NYSDPNFVENLQKNDLHKQEVLAAEP 351
           ++ +Y D +F+E  +  +LH Q++    P
Sbjct: 217 VSADYPDSSFLEPKELQNLHHQQMQKTYP 245


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 529 ETCGSAANDSSQQLANVAQMVEKVETKMFPK 621
           ++ GS+AN++ QQ  + AQM  K  T   PK
Sbjct: 357 QSVGSSANEAMQQRQHQAQMAAKRRTNSLPK 387


>At5g46680.1 68418.m05752 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 231 VSCRCIIDGLCSA 193
           V+C C+IDGLC A
Sbjct: 365 VTCNCLIDGLCKA 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,831
Number of Sequences: 28952
Number of extensions: 239303
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)