Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n18
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   2.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   3.1  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   5.5  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   5.5  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   7.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.5  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.5  

>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 397 PIAGGCCPWSCQPLY 353
           P+A G C W+C P Y
Sbjct: 166 PVADGFCKWNCWPYY 180


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = -2

Query: 482 GTCLSHFTCIVEFSSVSANTTVGIPPVKSHSWWMLSLELSAFI*TKVFADVHSAHPGFNF 303
           G CL  F  I     + A  T  +    S S+  + + LS  + +  F D+   HP F  
Sbjct: 232 GWCLFLFIAIKPLVYLLAVKTRSLKDKPSESF--ICIVLSMVLVSAFFTDIIGIHPIFGG 289

Query: 302 AVITRSCPHTIDIAL-LNNKIKKFI 231
            ++    PH  D+ + +  KI+  +
Sbjct: 290 FLVGTIIPHENDLTVKITEKIEDLV 314


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 320 HPGFNFAVITRSCPHTI 270
           HP  N  ++T  CPHT+
Sbjct: 318 HPALNAILVTPVCPHTL 334


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 565 DKGHISPQCEQRPMSL 612
           + GH+S QCEQ P  L
Sbjct: 131 ENGHLSGQCEQNPKGL 146


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 436 TELNSTMQVKWDRQVPVKFLLSETPKYCFAIAIDKLYE 549
           TE++ T QV  + +V ++  L +TP Y   I  DK +E
Sbjct: 74  TEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWE 111


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 498 QQKLHRHLSVPFHLHRRVQFG*CKHHSRDPTCEVP 394
           Q +L + L +PFH+H  ++   C + +     E+P
Sbjct: 670 QDRLDKQLVLPFHMHINLELLECVYLTCSMLMEIP 704


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 508 VFRTTKTSPALVCPISLASSSSVRLV 431
           V+R  +TS + +CPI + +   ++L+
Sbjct: 298 VYRDDRTSVSFICPIGIQTHEVIKLL 323


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 517 CFAIAIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWT 630
           C A ++DK++  + V+   + S QC+Q P+S   +SW+
Sbjct: 75  CVA-SVDKVFVLDIVQHDYYASIQCDQDPLS--SISWS 109


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 325  ECTSANTLVYIKADSSKDSIHQLWDFTGGIPTVVFA-----LTELNSTMQVKWDRQVPVK 489
            + +S   L+ +  D  + +++ ++ F+  +P   F       T LN+T ++KW     +K
Sbjct: 988  QLSSDPALIQLSLDGFRLAMNVIFFFSMDLPRNAFMQTLTKFTHLNNTSELKWTNMHALK 1047

Query: 490  FLL 498
             LL
Sbjct: 1048 TLL 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,579
Number of Sequences: 5004
Number of extensions: 55596
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)