Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n18
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   5.8  
SB_5514| Best HMM Match : TB (HMM E-Value=4.3)                         28   7.6  
SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   28   7.6  

>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 520  SNTLVFRTTKTSPALVCPISLASSSSVRLVQ 428
            SNTLV  +TKTS  LV  I L + +  ++ Q
Sbjct: 2691 SNTLVLLSTKTSVMLVLDIDLVAKTHTKVCQ 2721


>SB_5514| Best HMM Match : TB (HMM E-Value=4.3)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 355 IKADSSKDSIHQLWDFTGGIPTVVFALTELNSTMQVKWDRQ 477
           +K D S + +HQ+    G +P  +  +++L   + V W R+
Sbjct: 136 LKDDLSAEELHQIKYSNGHVPQFLRTMSQLKPELSVIWPRR 176


>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 210 LFPFCDNNEFLNFIVE*RDIYS-VWTRSSDNSEIKSGMRRMYVSKHFSLYKG 362
           +  FC N + L+++ + RDIY   W   S++ +++     + VS  + + +G
Sbjct: 499 ILEFCANGDLLSYLKKKRDIYDPAWCAPSEDHDVQFTQMEL-VSAAYQVARG 549


>SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 506 HQSIASLLP*TSSTNTMMWRIRATSARSANRGRCLS 613
           HQ IAS LP T+S    M    +TS   +N   C+S
Sbjct: 205 HQRIASTLPVTASHPIYMQATPSTSGEPSNVNSCVS 240


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 470  SHFTCIVEFSSVSANTTVGIPPVKSHSWWMLSLELSAFI 354
            S+FTC   +     N TVG  P   H  ++  L ++  +
Sbjct: 1469 SNFTCTCPYGYTGKNCTVGFKPEVEHRKYVYDLRIAVLL 1507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,174,544
Number of Sequences: 59808
Number of extensions: 429667
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)