Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n18
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27410.1 68415.m03312 hypothetical protein contains Pfam prof...    29   2.7  
At3g05675.2 68416.m00633 expressed protein                             28   4.7  
At3g05675.1 68416.m00632 expressed protein                             28   4.7  
At5g37300.1 68418.m04480 expressed protein                             28   6.2  
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    27   8.2  
At5g10820.1 68418.m01257 integral membrane transporter family pr...    27   8.2  

>At2g27410.1 68415.m03312 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 309

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 340 NTLVYIKADSSKDSIHQLWDFTGGIPTVVFALTELNS 450
           N L   K    +D ++ LW F  G   + FALT  NS
Sbjct: 226 NVLDACKTLFKEDDVYPLWSFRSGTGKLCFALTPKNS 262


>At3g05675.2 68416.m00633 expressed protein
          Length = 441

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 182 SRPCLEVRKQKIKSSWHARLCLRHSAMTNEIHDNSLCH 69
           SR C+EV  Q+     H  L      +++++H+++LCH
Sbjct: 66  SRYCVEVICQESDYDHHINLLRLLYVVSDDVHEDNLCH 103


>At3g05675.1 68416.m00632 expressed protein
          Length = 441

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 182 SRPCLEVRKQKIKSSWHARLCLRHSAMTNEIHDNSLCH 69
           SR C+EV  Q+     H  L      +++++H+++LCH
Sbjct: 66  SRYCVEVICQESDYDHHINLLRLLYVVSDDVHEDNLCH 103


>At5g37300.1 68418.m04480 expressed protein
          Length = 481

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 533 MAIAKQYFGVSDNKNFTGTCLSHFTCIVEFSSVSANTTVGIPPVKSHSWWM 381
           +AI K +  + D  +     L+    I +  ++ +NTT    P  S +WW+
Sbjct: 140 LAIVKIHHSIGDGMSLMSLLLACSRKISDPDALVSNTTATKKPADSMAWWL 190


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 603 RPLFALRADVALILHIIVFVELVYGNSEAILWCFGQQK-LHRHLSV 469
           +PLF L    +L++ +++F+ L     E    C G++K L+RH +V
Sbjct: 28  KPLFFLILCGSLVIVLVMFLRLGRSQKEETDSCNGEEKVLYRHQNV 73


>At5g10820.1 68418.m01257 integral membrane transporter family
           protein contains 11 transmembrane domains; similar to
           folate/methotrexate transporter FT1 (GI:5813863)
           {Leishmania donovani};
           lignostilbene-alpha,beta-dioxygenase gene, Synechococcus
           PCC7942, EMBL:AF055873
          Length = 503

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 394 WDFTGGIPTVVFALTELNSTMQVKWDRQVPVKFL 495
           W+ T GIP  +F +TE + T  +   R +P+  L
Sbjct: 367 WNLTLGIPDSLFVITEESFTKMISKIRWIPMVVL 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,284,439
Number of Sequences: 28952
Number of extensions: 288541
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)