Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n17
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             28   7.6  

>SB_8052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 434 GTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLXDRVVMVIDEKNXFVTARAFPEL 604
           G +  +  YPIKSC  + L+ A C    L +G   DR  +++++KN  +T R +P L
Sbjct: 245 GHVSGLYIYPIKSCKGIPLDSALC----LTEGLQYDRRWVIVNDKNVVLTQRQYPSL 297


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +2

Query: 440 LKAINAYPIKSCAPVMLEKAECSILGLKDGWLXDRVVMVIDEKNXFVTARAFPEL 604
           L+ I  YP+KSCA   +        GLK     DR  MVI E    V+ +  P+L
Sbjct: 534 LEQICLYPVKSCAAYKVSNWRIGPRGLK----YDRQWMVITESGACVSQKREPKL 584


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 337 DGSWCAWRCLLRLSPVLSRKQ 399
           +G  C WRCL+ L   L++KQ
Sbjct: 581 EGGNCTWRCLMFLQKKLAKKQ 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,137
Number of Sequences: 59808
Number of extensions: 261479
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)