Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n17
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical ...    49   3e-06
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = +2

Query: 413 PENWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLXDRVVMVIDEK-NXFVTAR 589
           P  W  VG +K+++ +PIKSC  V +   +C+ LG   G L DR  M+++E    F+TAR
Sbjct: 36  PREWVPVGVVKSLHIFPIKSCKSVDVFAFKCTKLGPVMGDLEDRAFMLVEESTGKFITAR 95

Query: 590 AFPELL 607
             P+L+
Sbjct: 96  QKPKLV 101


>U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical
           protein F53E10.1 protein.
          Length = 339

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = +2

Query: 422 WTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLXDRVVMVIDEK-NXFVTARAFP 598
           W  +G +K ++ YPIKSC PV +   +C+ LG     L DRV ++++E    F+TAR  P
Sbjct: 39  WVPIGIVKGLHIYPIKSCKPVDVFAFKCTKLGPMMEELEDRVFVLVEESTGKFITARQKP 98

Query: 599 ELLD 610
           +L++
Sbjct: 99  KLVN 102


>AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical
           protein F56A11.5 protein.
          Length = 340

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +2

Query: 398 KKIKIPE-NWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLXDRVVMVIDEKNX 574
           KK   P+  W  VG +K+++ YPIKSC    + +  C+  G + G   DR  +VI+    
Sbjct: 33  KKYSKPKAEWVPVGRIKSLHLYPIKSCKGKEVFQYRCTPFGPRLGEYLDRHFLVINSDGK 92

Query: 575 FVTARAFPELL 607
           F TAR  P+++
Sbjct: 93  FYTARTKPQMV 103


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 54   INLLFDPHXIPDFTKQFN*TISLHYXCTLENI 149
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 54   INLLFDPHXIPDFTKQFN*TISLHYXCTLENI 149
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 349 CAWRCLLRLSPVLSRKQEDKNTRKLD*SRNAQSYQRLSN*IM 474
           C    +L L  V+  ++ DKN ++L    NAQ +QR++  ++
Sbjct: 223 CVLFPILSLLLVIEIRKADKNQKRLTAPTNAQDFQRITRLVL 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,576
Number of Sequences: 27780
Number of extensions: 209186
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)