Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n16
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0544 - 18655186-18655567,18656835-18657151                       28   4.5  

>10_08_0544 - 18655186-18655567,18656835-18657151
          Length = 232

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +2

Query: 227 VKKDDPI---AENSSPETXXXXXXXXXXXXQVTDKMEPSISSESAAEVNSLVAXV--EEG 391
           VKK  P+   A ++SPET              T++    +SSE   E    VA    +EG
Sbjct: 169 VKKTVPVEDGAPSTSPETTETAAAAEPEKAPATEEKPREVSSEEVKEKEDAVAAAAPDEG 228

Query: 392 AKE 400
           AKE
Sbjct: 229 AKE 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,487
Number of Sequences: 37544
Number of extensions: 140496
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)