Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n15
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   3.4  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   6.0  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 3   TSHLDTA*KTCNSFIKKYEDNNCIMV*KCSSNLQYNY 113
           TSHLDT  K  + FI+K + ++C ++    + LQ+N+
Sbjct: 268 TSHLDTLTKGISQFIEKRDAHSCKLL---YALLQFNH 301


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 702 CYHLXHFHLFLYISPFNNIFSNFTAFLLHYTPL 604
           C H  +F  F +    N I  +   +  HYTPL
Sbjct: 132 CQHSPYFKSFPFEESKNKILDSIHEYEKHYTPL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,186
Number of Sequences: 5004
Number of extensions: 45492
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)