Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n15
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu...    28   5.2  
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id...    28   6.9  
At3g55790.1 68416.m06199 expressed protein predicted protein, Ar...    27   9.1  

>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
            putative similar to mdr-like P-glycoprotein atpgp1
            GI:3849833 from [Arabidopsis thaliana]
          Length = 1245

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 347  SKQKIIIRA*DKVMKGRTLT*VTNKDNREDEVDEVRAGARGR 472
            S +K++  A DK+MKGRT   V ++ +   + D V    +GR
Sbjct: 1176 SSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGR 1217


>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
           identical to GI:11993463
          Length = 961

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 184 DGYILKGLGSVGDEGLFKNTTASL*LYCRLLEHF 83
           DGY+++GL ++G+   F +   +L    RL +HF
Sbjct: 226 DGYVVRGLVNLGNTCFFNSIMQNLLSLDRLRDHF 259


>At3g55790.1 68416.m06199 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 103

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 353 VLNGFIFIKFITYWLL 306
           VL  F+F+ FI+YWLL
Sbjct: 87  VLQSFLFMVFISYWLL 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,641
Number of Sequences: 28952
Number of extensions: 219301
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)