Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n13
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   2.8  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   2.8  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   3.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   4.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   4.8  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    24   4.8  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    24   4.8  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    24   4.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   8.5  

>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 110 ISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 6
           +S + + S+P N  +PN+  F +G +  G   S++
Sbjct: 21  LSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSL 55


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 110 ISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 6
           +S + + S+P N  +PN+  F +G +  G   S++
Sbjct: 21  LSKRKSKSTPYNALLPNVTVFAMGGTIAGCANSSL 55


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 YDYVSTRFGLLNFMCTKPIFVFDS 266
           YD +S  +GL  F+C+ P+FV  S
Sbjct: 107 YDNISD-YGLKYFLCSLPLFVMFS 129


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 302 PFLYIFVKFIIYRIENKYRFRTHKIQQTKSCRN 204
           PF Y+  +FI  +++N + F    I++ K   N
Sbjct: 428 PFDYLPARFICLKVQNPFVFHHSFIEEAKKGLN 460


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 122 NKNPISSKTAPSSPANQQIPNIAT 51
           N NP SS+    SPAN   PNI +
Sbjct: 253 NNNPSSSRRESESPANS--PNITS 274


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 17  VVSHTRKFQL*MLQY*EFADLRDLKAQFCY*WDSCFVFSCR 139
           V  H ++F     +Y     L D +   C  W +CF F CR
Sbjct: 139 VCGHNQRFP----RYNRIRALLDSRKGRCGEWANCFTFLCR 175


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 143 CNDMRKQNKNPISSKTAPSSPANQQIP 63
           CN +      P   K AP SPA + IP
Sbjct: 130 CNVVGYDMPTPGEQKEAPPSPAQEAIP 156


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 LLNSTRSLDDYDYVSTR 215
           +LNST  +DD  Y+STR
Sbjct: 540 ILNSTAYIDDIMYMSTR 556


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 8    YLIVVSHTRKFQL*MLQY*EFADLRDLKAQFCY*WDSCFVFSCR 139
            Y +VV   + FQ    QY    + + +K+     W S   F CR
Sbjct: 956  YQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCR 999


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,968
Number of Sequences: 5004
Number of extensions: 23126
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)