Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n13
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           26   7.4  
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    25   9.7  
03_05_0634 + 26298638-26298866,26299338-26299452,26299755-262998...    25   9.7  

>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 198 DYVSTRFGLLNFMCTKPIFVFDSIDDKFHK 287
           D+VSTR+GL N   + PI V +    + HK
Sbjct: 123 DHVSTRYGLKN-ETSSPISVLERHSGELHK 151


>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 122 NKNPISSKTAPSSPANQQIPNIATFIIGTSEYGSLLSNI 6
           NKN IS +   S    +++P I T I+  S  G L+S +
Sbjct: 165 NKNTISGQGTVSLELLEEVPEIDTIIVPISG-GGLISGV 202


>03_05_0634 +
           26298638-26298866,26299338-26299452,26299755-26299800,
           26299952-26300134
          Length = 190

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 225 LNFMCTKPIFVFDSIDDKFHKYIKE-----WHRKKK 317
           L+ +  +PI V DS+D+  H+  +E      HRKKK
Sbjct: 95  LSNLLPRPIIVADSLDEHCHRIPQERVSARGHRKKK 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,253,978
Number of Sequences: 37544
Number of extensions: 113884
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)