Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n13
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)              28   1.9  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)              26   5.8  
SB_38537| Best HMM Match : VWA (HMM E-Value=0)                         26   5.8  
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)                   26   7.6  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      26   7.6  
SB_16325| Best HMM Match : PVL_ORF50 (HMM E-Value=7)                   26   7.6  

>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
          Length = 603

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 1   DTIFDSSEPYSEVPIINVAILG 66
           DT++  SEPYS   ++ VA+LG
Sbjct: 280 DTMYQLSEPYSPSFVLGVAVLG 301


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -1

Query: 107 SSKTAPSSPANQQIPNIATFIIGTSEYGSLLS 12
           +SK +PS PA++++ +++   I T +Y + +S
Sbjct: 419 TSKVSPSEPAHKRLKSMSGEYISTKKYSNTIS 450


>SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)
          Length = 528

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 228 NFMCTKPIFVFDSIDDKFHKYIKE 299
           NFM T+P+++ DS   +FH  +K+
Sbjct: 267 NFMETRPLYLKDSGSMEFHSALKQ 290


>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1174

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198  DYVSTRFGLLNFMCTKPIFVFDSIDDKFHKY 290
            D    RFGL N + T+P F  D+  ++F +Y
Sbjct: 1010 DNSPNRFGLYNEVPTQPYFHTDNSPNRFGRY 1040


>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 137 DMRKQNKNPISSKTAPSSPANQQIP-NIATFIIGT 36
           D+R Q K PISS+  P S  +  +P +  TF   T
Sbjct: 2   DVRDQPKRPISSEHLPRSTPSGTLPGSYGTFTAST 36


>SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 90  RRSFATNGILVLFSHVVTF*NTLNGLLNSTRSLDD 194
           R SFA +   V+   V+T   ++     STRS+DD
Sbjct: 43  RTSFAESSFSVVVEDVLTLAKSVEDTRESTRSVDD 77


>SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)
          Length = 376

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 96  SFATNGILVLFSHVVT 143
           +FA  GIL+LFS++VT
Sbjct: 47  AFACQGILILFSNIVT 62


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 134 MRKQNKNPISSKTAPSSPANQQIP 63
           ++KQ      +KT P+SP+ QQ+P
Sbjct: 753 VKKQKLGQKENKTPPTSPSIQQVP 776


>SB_16325| Best HMM Match : PVL_ORF50 (HMM E-Value=7)
          Length = 201

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 155 SILKCNDMRKQNKNPISSKTAPSSPAN 75
           ++    ++R+ N+NP+ S  A S+PA+
Sbjct: 62  NVAVAEELRRWNRNPMGSSRAGSNPAS 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,028
Number of Sequences: 59808
Number of extensions: 157685
Number of successful extensions: 335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)