Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n13
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26630.1 68417.m03837 expressed protein                             29   0.89 
At2g19330.1 68415.m02255 leucine-rich repeat family protein cont...    26   4.8  
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox...    25   8.3  
At1g57990.1 68414.m06572 purine permease-related low similarity ...    25   8.3  

>At4g26630.1 68417.m03837 expressed protein
          Length = 763

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 146 KCNDMRKQNKNPISSKTAPSSPANQQIP 63
           K +  RK+++NPI +  APS  A+++ P
Sbjct: 639 KASSKRKKSENPIKASPAPSKSASKEKP 666


>At2g19330.1 68415.m02255 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 380

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 128 KQNKNPISSKTAPSSPANQQIPNIATF 48
           ++ ++P+SS ++PSSP++   P   +F
Sbjct: 28  QRKRSPLSSPSSPSSPSSPSSPKSPSF 54


>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
           lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
           gi:1495804 from [Solanum tuberosum]
          Length = 886

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 234 MCTKPIFVFDSIDDKFHKY 290
           +C K I  FDS +D FH Y
Sbjct: 313 VCDKTINEFDSFEDVFHLY 331


>At1g57990.1 68414.m06572 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 390

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = +3

Query: 201 YVSTRFGLLNFMCTKP------IFVFDSIDDKF 281
           YVS  FG +  MCT P      +  FD +DD+F
Sbjct: 316 YVSGVFGDVVHMCTSPLVALFVVLAFDFMDDEF 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,416,808
Number of Sequences: 28952
Number of extensions: 108191
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)