Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n11
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   1.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   3.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   5.8  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   5.8  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   7.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.6  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 442 IIYFNLDVIKNTLVECQNVKENVNSN 365
           +I+ +L V++  L ECQN+ ++V+ N
Sbjct: 77  VIHSHLPVLQKGLQECQNLNKSVSQN 102


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 191  LRILHQCC---WFPPGQTVDRRGSSGC 262
            L ++H+ C   WF  G ++ +  SSGC
Sbjct: 1283 LHVMHEDCYKEWFSNGDSISQSCSSGC 1309


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 442 IIYFNLDVIKNTLVECQNVKENVNSN 365
           +IY NLD +   L EC       N+N
Sbjct: 872 LIYKNLDYVAPLLFECMQFTSTTNAN 897


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 248 PVGLQSALEETNSTDAI 198
           P+ LQS  EE N TDAI
Sbjct: 72  PLELQSQFEERNETDAI 88


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 97  PSTVQLPSMLFPERCDPFSSHKSAGHTENRGSPYIASVLLVS 222
           PS + LP + F ER DP   +       + G+PY     ++S
Sbjct: 377 PSLLSLPYLGFVERDDPVYVNTRKMILSSEGNPYYLKGKVIS 418


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 412 NTLVECQNVKENVNSNKGEELEK 344
           N   E Q+V+EN NS+ GE+ +K
Sbjct: 72  NFFSEKQSVRENGNSSAGEKKQK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,410
Number of Sequences: 5004
Number of extensions: 36213
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)