Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n11
(467 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41) 34 0.051
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.1
SB_20530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_50432| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-20) 28 3.4
SB_56875| Best HMM Match : LON (HMM E-Value=0) 28 4.4
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 28 4.4
SB_25283| Best HMM Match : LIM (HMM E-Value=1.1) 27 5.9
SB_31686| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_20087| Best HMM Match : DUF1131 (HMM E-Value=1.3) 27 5.9
SB_52920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_28796| Best HMM Match : LIM (HMM E-Value=5.2) 27 7.7
SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_47739| Best HMM Match : WCCH (HMM E-Value=3.5) 27 7.7
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
Length = 536
Score = 34.3 bits (75), Expect = 0.051
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 312 DCCALSRSWRGGLWRDLHPDDPRRSTVCPGGNQQ 211
D CA + WRDLHPDDP CP G +
Sbjct: 291 DACAHLGEFLDQYWRDLHPDDP-EELPCPDGTSR 323
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 30.7 bits (66), Expect = 0.63
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 203 HQCCWFPPGQTVDRRGSSGCKS 268
HQ W+PPG + R GC+S
Sbjct: 475 HQGKWYPPGSEISRNSYGGCES 496
Score = 30.7 bits (66), Expect = 0.63
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 203 HQCCWFPPGQTVDRRGSSGCKS 268
HQ W+PPG + R GC+S
Sbjct: 840 HQGKWYPPGSEISRNSYGGCES 861
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 215 WFPPGQTVDRRGSSGCKS 268
W+PPG + R GC+S
Sbjct: 673 WYPPGSEISRSSYGGCES 690
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 215 WFPPGQTVDRRGSSGCKS 268
W+PPG + R GC+S
Sbjct: 1038 WYPPGSEISRSSYGGCES 1055
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 128 FPSAVTRFLHIRAQDTQRIEALRI-LHQCCW 217
FP+ +TR+L IR + + A+R+ L+ C W
Sbjct: 3875 FPTIITRYLRIRPMGRRGLNAMRVELYGCNW 3905
>SB_20530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRG 189
L+++F+ +QL +F E C P++S + H E N G
Sbjct: 43 LSEVFQLTGVIQLTEWVFSEACHPYTSGRVGQHLEQNEG 81
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRG 189
L+++F+ +QL F E C P++S + H E N G
Sbjct: 454 LSEVFQLTGAIQLTEWEFSEACHPYTSKRVGQHLEQNEG 492
>SB_50432| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-20)
Length = 379
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = -2
Query: 442 IIYFNLDVIKNTLVECQNVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRFVAGL 263
I+Y +N VEC V+ NV S +G W +AF+ LLC + +L L
Sbjct: 143 ILYHANITAENAKVECA-VRSNVQSWRG---------WYLAFIVLLCIVMILIPILYTAL 192
Query: 262 APR*SPSVYSLPWRKPTALMQYTESL 185
+ ++++P K + Q TE +
Sbjct: 193 TVK----LFTVPGMKKASQRQKTERM 214
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 27.9 bits (59), Expect = 4.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 370 SNKGEELEKLFSSWTIAFM*LLCSI-QVLAGRFVAGLAPR*SPSVYSLPWRKPTALMQYT 194
S G E + WT+ L SI + + +FV+G SLPW PT L +
Sbjct: 751 STTGSETKSAEEDWTLFRDTLQDSIDKAILSKFVSGRT--------SLPWLNPT-LRRLV 801
Query: 193 ESLDSLCVLRSYVKKTGHSARETTWRVVER 104
+ L + +KKTG S WR + R
Sbjct: 802 RKKNRL---HAKLKKTGCSRLRDKWRNIRR 828
>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 455
Score = 27.9 bits (59), Expect = 4.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 370 SNKGEELEKLFSSWTIAFM*LLCSI-QVLAGRFVAGLAPR*SPSVYSLPWRKPTALMQYT 194
S G E + WT+ L SI + + +FV+G SLPW PT L +
Sbjct: 281 STTGSETKSAEEDWTLFRDTLQDSIDKAILSKFVSGRT--------SLPWLNPT-LRRLV 331
Query: 193 ESLDSLCVLRSYVKKTGHSARETTWRVVER 104
+ L + +KKTG S WR + R
Sbjct: 332 RKKNRL---HAKLKKTGCSRLRDKWRNIRR 358
>SB_25283| Best HMM Match : LIM (HMM E-Value=1.1)
Length = 1097
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRG 189
LN++ + +QL F E C P++S + H E N G
Sbjct: 471 LNEVLQLTGAIQLTEWEFSEACHPYTSGRVGQHLEQNEG 509
>SB_31686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 239 LQSALEETNSTDAIYGEPRFSVCPALLCEENGSQRSGNNME 117
+ +A + S D I + SVCP C+ +GS+ GN ++
Sbjct: 10 ITTATYQVCSNDRIKPQVAGSVCPYGTCQSDGSEYHGNYVD 50
>SB_20087| Best HMM Match : DUF1131 (HMM E-Value=1.3)
Length = 262
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRG 189
LN++ + +QL F E C P++S + H E N G
Sbjct: 43 LNEVLQLTGAIQLTEWEFSEACHPYTSGRVGQHLEQNEG 81
>SB_52920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTENRG 189
L+++ + +QL F E C P++S + H E G
Sbjct: 43 LSEVLQLTGAIQLTEWGFSEACHPYTSGRVGQHLEQNG 80
>SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 121 MLFPERCDPFSSHKSAGHTENRGSPYIASVLLVSSRADCRPTGIIW 258
++ PERC P A T + GS + V P+G +W
Sbjct: 378 IMMPERCCPVCPESEAIRTYDEGSTPTDAGCFVEQGKKFYPSGAVW 423
>SB_28796| Best HMM Match : LIM (HMM E-Value=5.2)
Length = 625
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRGSP 195
L+++ + +QL F E C P++S + H E N G P
Sbjct: 29 LSEVLQLTGVIQLTEWEFSEACHPYTSGRVGQHLEQNEGWP 69
>SB_22294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRG 189
L+++ + T+QL F E C P++S + H E N G
Sbjct: 294 LSEVLQLTGTIQLTEWGFSEACHPYTSGRVGQHLEQNEG 332
>SB_47739| Best HMM Match : WCCH (HMM E-Value=3.5)
Length = 932
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTE-NRGSP 195
L+++ + +QL F E C P++S + H E N G P
Sbjct: 325 LSEVLQLTGVIQLTEWEFSEACHPYTSGRVGQHLEQNEGWP 365
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 76 LNKIFK*PSTVQLPSMLFPERCDPFSSHKSAGHTENRG 189
L+++ + +QL F E C P++S + H E G
Sbjct: 544 LSEVLQLTGAIQLTEWGFSEACHPYTSGRVGQHLEQNG 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,028
Number of Sequences: 59808
Number of extensions: 293328
Number of successful extensions: 1029
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -