Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n11
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-3|AAK21432.1|  145|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   6.7  
AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine re...    27   6.7  
AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    27   8.9  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    27   8.9  

>AF039038-3|AAK21432.1|  145|Caenorhabditis elegans Hypothetical
           protein K06A5.3 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 184 DSLCVLRSYVKKTGHSARETTWRVVERSK 98
           DSL V+ + V K  H+ R + WR  ER+K
Sbjct: 82  DSLYVIYTLVGKEWHNERMSAWRCWERAK 110


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 424 DVIKNTLVECQNVKENVNSNKGEELE 347
           DVI+N  VE Q+  EN+   K  ELE
Sbjct: 413 DVIRNLQVEFQSATENLRKTKKIELE 438


>AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 48 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 412 NTLVECQNVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRFVAGL 263
           +++V C N     N  K E+  + ++ W +    +L ++  LA +++A L
Sbjct: 97  SSIVICINKLRTANPEKFEKRNQFWNRWCLLIYGVLLALSCLAAKYLAVL 146


>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 IFFYILTFNKCVFDDIQVEINDF 445
           I  Y  + N C +DD+++ +ND+
Sbjct: 283 IIIYDFSRNLCTYDDLRLHVNDY 305


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 377 IFFYILTFNKCVFDDIQVEINDF 445
           I  Y  + N C +DD+++ +ND+
Sbjct: 283 IIIYDFSRNLCTYDDLRLHVNDY 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,299,189
Number of Sequences: 27780
Number of extensions: 225099
Number of successful extensions: 665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)