Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n11
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.31 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 430 NLDVIKNTLVECQNVKENVNSNK----GEELEKLFSSW 329
           N+D  KNT+++ +N   ++N  K     E+L +++ S+
Sbjct: 420 NIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSY 457


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 391 NVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRF 275
           N   N N+N     +KL+ ++ I    +   + V  G F
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 391 NVKENVNSNKGEELEKLFSSWTIAFM*LLCSIQVLAGRF 275
           N   N N+N     +KL+ ++ I    +   + V  G F
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 320 VYVIAVLYPGLGGAVCGGTC 261
           V+ IA ++ G+G A C  +C
Sbjct: 90  VFKIAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 320 VYVIAVLYPGLGGAVCGGTC 261
           V+ IA ++ G+G A C  +C
Sbjct: 143 VFKIAPIFKGIGYATCVLSC 162


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 449 IQNHLFQLGCHQK 411
           I+NHL QLG  QK
Sbjct: 100 IENHLKQLGYVQK 112


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 215 WFPPGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKRDSPAG 337
           WF   +TVD  G +   +++    +D +R        + AG
Sbjct: 395 WFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQWDNSTSAG 435


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 218  FPPGQTVDRRGSSGCK 265
            F  GQTV   G  GC+
Sbjct: 959  FQEGQTVSGGGMGGCQ 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,713
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)