Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n11
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24880.1 68417.m03560 expressed protein                             29   1.2  
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    29   1.6  
At5g11940.1 68418.m01396 subtilase family protein contains simil...    27   4.8  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    27   4.8  
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    27   4.8  
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    27   4.8  
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-...    27   6.3  
At2g41290.1 68415.m05099 strictosidine synthase family protein s...    27   8.4  

>At4g24880.1 68417.m03560 expressed protein
          Length = 417

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 239 LQSALEETNSTD--AIYGEPRFSVCPALLCEENG 144
           LQS L ET + D  ++Y + RFSV P   C+++G
Sbjct: 209 LQSKLAETGACDPPSVYHKFRFSVVPFYNCDQSG 242


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 149 FLHIRAQDTQRIEALRILHQCCWFPPGQTVDRRGSSGCK 265
           F HI++ DT   + +R        PPGQ   RR S G K
Sbjct: 838 FSHIKSPDTSNAKTMRRQSLTGVMPPGQERSRRSSIGGK 876


>At5g11940.1 68418.m01396 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 762

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 248 PVGLQSALEETNSTDAIYGEPRFS 177
           P  L+SAL  T ST   YGEP FS
Sbjct: 562 PAALKSALITTASTTDPYGEPIFS 585


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 228 GRL*TDGDHLGASPATNRPAKTWIEHSNHINAIVQLENN 344
           GRL   G H G S   N+ + + +  S  ++   Q+ENN
Sbjct: 427 GRLSHGGRHSGGSAEANKTSSSHLHASKSVSVKQQVENN 465


>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 228 GRL*TDGDHLGASPATNRPAKTWIEHSNHINAIVQLENN 344
           GRL   G H G S   N+ + + +  S  ++   Q+ENN
Sbjct: 427 GRLSHGGRHSGGSAEANKTSSSHLHASKSVSVKQQVENN 465


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 228 GRL*TDGDHLGASPATNRPAKTWIEHSNHINAIVQLENN 344
           GRL   G H G S   N+ + + +  S  ++   Q+ENN
Sbjct: 427 GRLSHGGRHSGGSAEANKTSSSHLHASKSVSVKQQVENN 465


>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 619

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 PGQTVDRRGSSGCKSRHKPPRQDLDRAQQSHKR 322
           PG   D+R     K+  K  RQ   RAQ+ H+R
Sbjct: 112 PGADNDKRDKMRLKNERKHQRQKEKRAQELHER 144


>At2g41290.1 68415.m05099 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 376

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 272 GGTCTQMIPVGLQSALEETNSTD 204
           GG  TQ++P  L  AL  TNS D
Sbjct: 140 GGVATQVLPRELNEALRFTNSLD 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,936
Number of Sequences: 28952
Number of extensions: 203515
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)