Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n06
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    35   0.013
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    27   2.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   6.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.2  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   8.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
 Frame = -1

Query: 410 SFPSIGSKPSTSALITWASTSASLLSIPNWRRCSD--TEGLQSHKSSSIFTARIPCSLVI 237
           S  S  S PS+S+  T  S+S S  SIP+    S   +  L S  SSS  ++    S +I
Sbjct: 214 SVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSII 273

Query: 236 SNTDKYFAIKSHIFGG*VRSTSLVISDMSSLSPSGSANTLEQPCFWRSSF 87
           S++    +  +        S+++  S  SS SP+ +++T+       SSF
Sbjct: 274 SSSSSSSSSPTS------TSSTISSSSSSSSSPTSTSSTISSSSSSSSSF 317


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 175 VLRTQPPNICDFIAKYLSVL-LITREH 252
           V+RT P NI +F  + LS+L LI R+H
Sbjct: 856 VMRTCPTNILEFYFQQLSILVLIVRQH 882


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 184  TQPPNICD--FIAKYLSVLLITREHGILAVKILEDLCDCRPSVSEHLLQLGIDKSDAEVL 357
            T+  N+C+   + K L+  L+ R    L  ++L+D    RP + + +     + SD E +
Sbjct: 925  TEIINLCNENSMFKQLARYLLKRSDSNLWSEVLQDSAYRRPLLDQVIATAVPESSDPEAV 984

Query: 358  AQVIKAEVE 384
            + V+KA +E
Sbjct: 985  SIVVKALME 993


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 31/103 (30%), Positives = 44/103 (42%)
 Frame = -1

Query: 428 SVSFNVSFPSIGSKPSTSALITWASTSASLLSIPNWRRCSDTEGLQSHKSSSIFTARIPC 249
           SVS   S  S  S PS+S+  T  S S+S  S  +    S +    S  SSS  ++    
Sbjct: 131 SVSSTTSSSS-SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189

Query: 248 SLVISNTDKYFAIKSHIFGG*VRSTSLVISDMSSLSPSGSANT 120
           S   S++    +  S        STS   S  SS S S S+++
Sbjct: 190 SSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSS 232


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
 Frame = -1

Query: 470 SSSKGIRFRIFLMISVSFNVSFPSIGSKPSTSALITWASTSASLLSIPNWRRCSDTEGLQ 291
           SSS      I  + S   + S PS  S  S+    + +S S++ LSI +    S      
Sbjct: 548 SSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAS 607

Query: 290 SHKSSSIFTARIPCSLVIS----NTDKYFAIKSHIFGG*VRSTSLVISDMSSLSPSGSAN 123
           +   SSI ++    S ++S    +T       S I  G   S+S++ S +S++  S S +
Sbjct: 608 TSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG---SSSILSSSISTIPISSSLS 664

Query: 122 TLEQPCFWRSSFIL 81
           T        SS ++
Sbjct: 665 TYSSSVIPSSSTLV 678


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 323 WRRCSDTEGLQSHKSSSIFTARIPCSLVIS 234
           ++  +D EG++S +S+++ TAR+P   V S
Sbjct: 44  FQEATDDEGIKSPESTTLSTARLPSGRVSS 73


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 161 SDMSSLSPSGSANTLEQPCFWRSSFILPIYIFLRFMAFIL 42
           +D         +  +E  CF+  + I P+Y F+R   F L
Sbjct: 367 NDFMQSEDYAKSEPIEDDCFYLDNVITPLYEFIRDQQFEL 406


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 517  YWYKKTLMEKELKPHPEEPWELAAQHTIELYSKTKPSFEELT 642
            YW+ + LMEK+L+  P++   L A+ ++   + T  S + ++
Sbjct: 1412 YWFGQPLMEKKLE-SPDDVQSLQAESSVSTPAVTAASEKSIS 1452


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 223  LSVLLITREHGI--LAVKILEDLCDCRPSV 306
            +SV+ +  EH I  +++ ILE L DC PS+
Sbjct: 1107 VSVMGLEDEHYIKLVSLSILEKLVDCSPSI 1136


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 256 ILAVKILEDLCDCRPSVSEHLLQLGID 336
           I AVK+ +DL D +  V E+L + G+D
Sbjct: 9   ISAVKLPQDLDDFKMLVQEYLQEFGMD 35


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 428 SVSFNVSFPSIGSKPSTSALITWASTSASLLSIPNWRRCSDT 303
           S SF V  PS+    S++  IT AST A+   I    + +DT
Sbjct: 313 SSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPTDT 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,480
Number of Sequences: 5004
Number of extensions: 58557
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)