Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n06
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0286 - 2094920-2097805                                           30   1.6  
01_05_0409 - 21896478-21897005,21897098-21897292,21897405-218975...    29   3.7  
03_02_0434 + 8403630-8405666                                           29   4.9  
07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    28   6.4  
05_07_0074 - 27509124-27509199,27509613-27512143                       28   6.4  
05_02_0041 - 5914708-5914785,5915517-5915600,5915829-5915930,591...    28   6.4  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    28   8.5  

>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 350 SASLLSIPNWRRCSDTEGLQSHKSSSIFTARIPCSLVISNTDKYFAIKSHIFGG*V--RS 177
           + +L  +P+W   S T  +    S ++ T  +P SLV   + ++  + S+   G +    
Sbjct: 460 TGTLGQLPDWLWTSLTSLINLDLSDNLLTGMLPASLVHMKSLQFLGLSSNQLEGQIPDMP 519

Query: 176 TSLVISDMSSLSPSGS 129
            SL + D+S+ S SGS
Sbjct: 520 ESLDLLDLSNNSLSGS 535


>01_05_0409 -
           21896478-21897005,21897098-21897292,21897405-21897542,
           21897641-21897728,21897837-21897925,21898032-21898553
          Length = 519

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 586 AQHTIELYSKTKPSFEELTRATQKIQAAYKGYHVRRNL 699
           AQ  +  +   KP   EL +A  K+Q  +KG+  RRNL
Sbjct: 67  AQAALIEFISPKPR-SELDQAATKVQKLFKGHRTRRNL 103


>03_02_0434 + 8403630-8405666
          Length = 678

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 163 ITREVLRTQPPNICDFIAKYLSVLLITREHGILAVKILEDLCDCRPSVSEHLLQLGIDKS 342
           ITR  ++ QP +I D IAK +   +  +E  IL   +L    D  P+     +   +D++
Sbjct: 178 ITRVPVQGQPDDIYDQIAKIIKEYIAPKESIIL--NVLSATVDF-PTCESIRMSQQVDRT 234

Query: 343 DAEVLAQVIKAE 378
               LA V KA+
Sbjct: 235 GERTLAVVTKAD 246


>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 613 KTKPSFEELTRATQKIQAAYKGYHVRR 693
           K + +F  + R   +IQAAY+G+ VRR
Sbjct: 797 KMRRNFINMRRQVIRIQAAYRGHQVRR 823


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 664 PVFSELLSLAPQKMASF-YCTVLSCVGPRAPRALLDAVLAPSPSKFSCT--SSLCKRFWP 494
           P F E +SL       + Y    SC  P  P   LDA+     SKFSC   SSL K  + 
Sbjct: 219 PSFFEPVSLVTYAEEGYAYAESASC--PPPPTGRLDALQVFEGSKFSCAHLSSLFKATFR 276

Query: 493 LD 488
           LD
Sbjct: 277 LD 278


>05_02_0041 -
           5914708-5914785,5915517-5915600,5915829-5915930,
           5916025-5916117,5916259-5916396,5916495-5916582,
           5916693-5916781,5916882-5916947,5917069-5917183,
           5917290-5917621
          Length = 394

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 634 ELTRATQKIQAAYKGYHVRRNL 699
           EL  A  K+Q  YK Y  RRNL
Sbjct: 79  ELDAAAVKVQKVYKSYRTRRNL 100


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 446 RIFLMISVSFNVSFPSIGSKPS-TSALITWASTSASLLSI 330
           ++F +I+ + + S    G +PS  S LITWA+  A L ++
Sbjct: 286 QVFSVIAQALSDSLELFGDEPSYLSELITWATEQAMLFAL 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,031
Number of Sequences: 37544
Number of extensions: 356679
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)