Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n06
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)                    38   0.008
SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)                34   0.13 
SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15)                      31   0.93 
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)                  28   8.7  

>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
          Length = 442

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
 Frame = +1

Query: 130 LPEGLKELMSDITREVLRTQPPNICDFIAKYL-SVLLITREHGILAVKILEDLCDCRPSV 306
           +P G + L+  + REVLR QP +I  F A+Y  + L I  E G    K  E+L      +
Sbjct: 12  VPPGFQNLLEGLAREVLREQPDDIVQFAAQYFKNQLSIREETGKDDAKRGENL---EKLM 68

Query: 307 SEHLLQLGIDKSDAEVLAQVIKAEVEGFEPMEGXXXXXXXXXXXXXXXRMPLDEEMTAKV 486
               + + ID  + +  A  I+A   G +  E                +   +EE  A  
Sbjct: 69  KGEEVDIDIDDPEVQKAATKIQASFRGHKTRE----------QIKQDKQQKDEEEAAALK 118

Query: 487 CQVARNAYRDYWYKKTLMEKELKPHPEEPWELAAQHTIELYSKTKP---SFEELTRATQK 657
            Q +   ++     K LM+ + +    E   +  Q T    ++      +  ++  A  K
Sbjct: 119 IQSSFRGHKAREEVKELMKSKSRESTREEVPMNEQETANTNAEEVDIDLNDPDVQGAALK 178

Query: 658 IQAAYKGYHVRRNL 699
           IQA+++G+  R  +
Sbjct: 179 IQASFRGHKAREEV 192


>SB_32469| Best HMM Match : IQ (HMM E-Value=3.69943e-42)
          Length = 416

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 127 ALPEGLKELMSDITREVLRTQPPNICDFIAKYLSVLLITRE 249
           ++P G + L+  +T E+LR +P NI  F A +    L  R+
Sbjct: 9   SVPSGFRNLLESLTVEILRVRPDNIPSFAADFFRERLAARQ 49


>SB_39783| Best HMM Match : IQ (HMM E-Value=1e-15)
          Length = 371

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +1

Query: 535 LMEKELKPHPEEPWELAAQHTIELYSKTKPSFEELTRATQKIQAAYKGYHVRRNLLH 705
           + E E     E    LA Q  I+ +   K   E    A   IQAAY+G   RR   H
Sbjct: 129 IREAERVKEEENRKHLAGQKRIQEFRSNKHMQENQIAAATTIQAAYRGMRCRRQAQH 185


>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
          Length = 727

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 535 LMEKELKPHPEEPWELAAQHTIELYSKTKPSFEELTRATQKIQAAYKGYHVRRNLLHHLK 714
           +M K      ++  E   + T  L  + K S E + R   K  A Y+GY VRR + H L+
Sbjct: 318 VMCKRQAKEQDDMKEKHKRETRNLSVEVKDSVEVIERLDLK--AHYRGYRVRRRIAHALQ 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,835,375
Number of Sequences: 59808
Number of extensions: 422108
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)