Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n06
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    33   0.20 
Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF016442-7|AAB65920.1|  481|Caenorhabditis elegans Hypothetical ...    29   4.4  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      29   4.4  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   5.8  

>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 631 EELTRATQKIQAAYKGYHVRRNLLHHLK 714
           E L  A  KIQAAYKGY VR+  +  LK
Sbjct: 549 ERLGEAATKIQAAYKGYTVRKKHVQFLK 576


>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +3

Query: 162 YHERGAPDSTSE------YMRFYSKIFIGIADYQRTW-YP 260
           YH+R AP +++       Y+ FY  I +G+  Y R W YP
Sbjct: 210 YHKRDAPSNSTSWMISVVYVTFYFIIVLGVKYYNRMWVYP 249


>U42847-3|AAA83605.2|  210|Caenorhabditis elegans Hypothetical
           protein F39H12.3 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 130 LPEGLKELMSDITREVLRTQPPNICDF 210
           +P  L+ ++  + REVLR+QP ++ +F
Sbjct: 9   VPHDLRPILEALAREVLRSQPSDVAEF 35


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 681 ISFICCLYFLSCSR*LLKRWLRFTVQFYRVLGRELPG 571
           + F+ C++   C + ++K W+ F+V    V G E PG
Sbjct: 648 VIFLSCIFIYLCIQIIVK-WIFFSVNAENVFGFEYPG 683


>AF016442-7|AAB65920.1|  481|Caenorhabditis elegans Hypothetical
           protein K12B6.7 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 451 RMPLDEEMTAKVCQVARNAYRDYWYKKTLMEKELKPHPE 567
           R PLD EM  K  ++AR  +     KKTL  K  +  PE
Sbjct: 48  RAPLDTEMAGKNFEIARGIFTQRVEKKTL-AKNFRKGPE 85



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 451 RMPLDEEMTAKVCQVARNAYRDYWYKKTLMEKELKPHPE 567
           R PLD EM  K  ++AR  +     KKTL  K  +  PE
Sbjct: 211 RAPLDTEMAGKNFEIARGIFTQRVEKKTL-AKNFRKGPE 248


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 681 ISFICCLYFLSCSR*LLKRWLRFTVQFYRVLGRELPG 571
           + F+ C++   C + ++K W+ F+V    V G E PG
Sbjct: 648 VIFLSCIFIYLCIQIIVK-WIFFSVNAENVFGFEYPG 683


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 231 IADYQRTWYPSSKDTRRLMRL*ALSIGASPP 323
           ++ Y R WYPS+ +   ++ L A+ +G  PP
Sbjct: 306 VSAYVR-WYPSNSNAEHVVSLNAVKVGVCPP 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,956
Number of Sequences: 27780
Number of extensions: 321142
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)