Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n06
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.94 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 473 ISSSKGIRFRIFLMISVSFNVSFPSIGSKPSTSALITWASTSASLLSIP 327
           I+   GI   I  +I+VSF  +  SIG+    SA +       + L +P
Sbjct: 411 IAQMNGISLGIGEVITVSFTATLASIGAASIPSAALITMLIVLTALGLP 459


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 144 ESFGKRKHIGTTMF 103
           E+F + KHIG TM+
Sbjct: 842 EAFNESKHIGFTMY 855


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 540 GEGAKTASRRALGARGPTHDRTV 608
           G G  T+SRR  G+R      TV
Sbjct: 285 GGGGTTSSRRTTGSRAAATTTTV 307


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 540 GEGAKTASRRALGARGPTHDRTV 608
           G G  T+SRR  G+R      TV
Sbjct: 285 GGGGTTSSRRTTGSRAAATTTTV 307


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 540 GEGAKTASRRALGARGPTHDRTV 608
           G G  T+SRR  G+R      TV
Sbjct: 285 GGGGTTSSRRTTGSRAAATTTTV 307


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +1

Query: 589 QHTIELYSKTKPSFEELTRATQKIQAAYKGYHVRRNL 699
           +H  + YSK K ++ +      +++  +KG ++  N+
Sbjct: 21  RHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNI 57


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 678 SFICCLYFLSCSR*LLKRWLRFTVQFYRVL 589
           SFI   YF+      L R+ RFT++  +VL
Sbjct: 15  SFILINYFIFLYFNSLVRFRRFTIELDKVL 44


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +1

Query: 88  NELLQKHGCSNVFALPEGLKELMSDITREVLRTQPPNICDFIAKYLSVLLI 240
           N L   H C  ++   EG++ +     RE   T+      ++A  L  L +
Sbjct: 468 NTLHHWHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLDRLFL 518


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 290 SHKSSSIFTARIPCSLVISNTDKYFAIKSHI 198
           ++K+   F+      +VIS + K+F I+S +
Sbjct: 242 TNKNGKFFSRSSTSRIVISESLKHFTIQSSV 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,966
Number of Sequences: 438
Number of extensions: 4052
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)