Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n06
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containi... 33 0.14
At1g20240.1 68414.m02528 hypothetical protein 30 1.8
At2g24570.1 68415.m02934 WRKY family transcription factor identi... 29 3.1
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.1
At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ... 28 5.4
At2g03020.2 68415.m00255 heat shock protein-related Prosite PS00... 28 5.4
At1g16760.1 68414.m02013 protein kinase family protein contains ... 28 5.4
At1g67310.1 68414.m07661 calmodulin-binding protein similar to a... 28 7.1
At5g03400.1 68418.m00293 hypothetical protein 27 9.4
At3g47190.1 68416.m05124 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 9.4
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 27 9.4
>At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 880
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 410 SFPSIGSKPSTSALITWASTS-ASLLSIPNWRRCSDTEGLQSHKSSSI 270
+F S+ S+PS S+ A+ ASLL PNW + S + L SH + ++
Sbjct: 24 AFFSVSSRPSLSSSDEVAAHDVASLLKTPNWEKNSSLKSLVSHMNPNV 71
>At1g20240.1 68414.m02528 hypothetical protein
Length = 566
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 167 VISDMSSLSPSGSANTLEQPC--FWRSSFILPIYIFLRFMAFILHYRFNLF 21
++S S+SP N +PC F S +L +YI F+ L RF LF
Sbjct: 251 LVSSRDSMSPENEVNLSREPCYIFGSCSGLLLLYIGGLFVVNPLTKRFRLF 301
>At2g24570.1 68415.m02934 WRKY family transcription factor identical
to WRKY transcription factor 17 GI:15991743 from
[Arabidopsis thaliana]
Length = 321
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 428 SVSFNVSFPSI-GSKPSTSALITWASTSASLLSIPNWRRCSDTEGLQSHKSSSIFTARIP 252
SV+ + + PS+ G+K +S ++ +A S S+ S ++ + T K SSIF A P
Sbjct: 114 SVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKGSSIFLAPAP 173
Query: 251 CSLVISN 231
V S+
Sbjct: 174 AVPVTSS 180
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 259 LAVKILEDLCDCRPSVSEHLLQLGIDKSDAEVLAQVIKAEVE 384
L VKI D + PSV E L L + D+E++A I AE +
Sbjct: 396 LPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAK 437
>At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 601
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 466 EEMTAKVCQVARNAYRDYWYKKTLMEKELKPHPEEPWELAAQHT--IELYSKTKPSFEEL 639
EE+++ + Q+ N DY + ++E+E P LAA+ ++L+ K K S E+
Sbjct: 36 EELSSNLEQLLTNPDCDYTDAEIIIEEEANPVSVHRCVLAARSKFFLDLFKKDKDSSEKK 95
Query: 640 TRATQKIQAAYKGYHVRRNLLHHL 711
+ K Y G R LH L
Sbjct: 96 PKYQMKDLLPY-GNVGREAFLHFL 118
>At2g03020.2 68415.m00255 heat shock protein-related Prosite
PS00430: TonB-dependent receptor proteins signature 1;
contains some similar to Small heat shock protein,
chloroplast precursor (SP:P30222) {Petunia hybrida}
Length = 247
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 610 CTVLSCVGPRAPRALLDAVLAPSPSKF 530
CTVL C G R AL VL P P F
Sbjct: 129 CTVLGCSGFREDPALTGPVLQPHPLAF 155
>At1g16760.1 68414.m02013 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 758
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 100 QKHGCSNVFALPEGLKELMSDITREVLRTQPPN 198
+KH +N ALP+G + + SD+TR L +PP+
Sbjct: 189 RKHKTANTPALPKGRRSIDSDVTRLGL-PKPPH 220
>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1035
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 613 KTKPSFEELTRATQKIQAAYKGYHVRRN 696
K + F EL + KIQA +GY +R+N
Sbjct: 889 KDRKCFLELRQKVVKIQAHVRGYQIRKN 916
>At5g03400.1 68418.m00293 hypothetical protein
Length = 170
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 493 VARNAYRDYWYKKTLMEKELKPHPE-EPWELAAQHTIELYSKTKPSFEE 636
VA +YW+KK M+K+ + + E ++ ++ IE+++K K + E
Sbjct: 82 VAMKNESEYWFKKWEMKKQSEEDSDVEIAQMMSEEEIEIWAKEKEAEAE 130
>At3g47190.1 68416.m05124 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to ACC oxidase from Brassica
oleracea [GI:559407], Cucumis melo [SP|Q04644],
Lycopersicon esculentum [SP|P05116]; contains Pfam
domain PF03171, 2OG-Fe(II) oxygenase superfamily
Length = 331
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/57 (19%), Positives = 29/57 (50%)
Frame = -1
Query: 434 MISVSFNVSFPSIGSKPSTSALITWASTSASLLSIPNWRRCSDTEGLQSHKSSSIFT 264
+I F ++ + S + + S S ++ + + +C+++ GL++H SS+ +
Sbjct: 163 IIVTLFEAIIETLSLELSGDQKMGYLSESTGVIRVQRYPQCTESPGLEAHTDSSVIS 219
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 583 AAQHTIELYSKTKPSFEELTRATQ--KIQAAYKGYHVRRNL 699
AA I L + + P EE T KIQ AY+ Y RR L
Sbjct: 116 AAAEVIRLTTPSTPQIEESKEETAAIKIQNAYRCYTARRTL 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,191
Number of Sequences: 28952
Number of extensions: 299206
Number of successful extensions: 945
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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