Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n03
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              28   7.1  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     28   7.1  
SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 513 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 674
           ISE P    P+PP ++ ASS        EE    F ++        L  PQ PP
Sbjct: 222 ISEAPPASTPKPPVSMPASSNVAVITVKEEGADPFLSIQAISFFKLLVLPQDPP 275


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 666 SAAVLNALTRQHHKPFRI--PAAVLQWAARSQKDLKLEPLP 550
           +  +LN++  QH +PF +      L W++ S+++ K + LP
Sbjct: 7   TGCILNSILYQHKRPFNVCLTRKTLYWSSESKEETKPKNLP 47


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +3

Query: 513 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 680
           +S V     P+P   V    P +T QP+ E  +   +         E +  TPP++ P P
Sbjct: 172 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 231

Query: 681 A 683
           A
Sbjct: 232 A 232


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +3

Query: 513 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 680
           +S V     P+P   V    P +T QP+ E  +   +         E +  TPP++ P P
Sbjct: 117 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 176

Query: 681 A 683
           A
Sbjct: 177 A 177


>SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 660 AVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQE 523
           AVL AL+  HH+    P  V  W  +   D+   P+  V+     E
Sbjct: 7   AVLTALSDLHHRKAAGPDGVPNWLLKDYADILASPVTSVLNSSFAE 52


>SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 636 VELTHLTPPQSPPGPATQ 689
           + LT LTPPQ PP P  Q
Sbjct: 74  LRLTRLTPPQPPPQPPDQ 91


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 639  RQHHKPFRIPAAVLQWAARSQKDLKLEP 556
            +QH +P R P A +  AAR  +   LEP
Sbjct: 1830 KQHQEPARTPVAAVPAAARDARITSLEP 1857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,577
Number of Sequences: 59808
Number of extensions: 430476
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)