Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n02
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.050
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.3  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   5.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   10.0 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPR-PSLPSALPPQP 463
           PPP  P+  V   P  PSLPSA+PP P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMP 198



 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPP 457
           PPP   S   +    P +PS+LPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPP 173


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = +2

Query: 368 RSRERRPP--PLV----PSVTVVHGPRPSLPSA 448
           RS    PP  PL+    PS +++H P P+ PSA
Sbjct: 278 RSSSTSPPRSPLIISDSPSSSIIHNPHPTHPSA 310


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +2

Query: 332 LIRPSEHLAIVERSRERRPPPLVP-----SVTVVHGPR-PSLPSALPPQPV 466
           L+   E L + E   E   PP++P     S +  H  + P+LPS LPP+P+
Sbjct: 150 LVNTIEKLKVKE---ENEAPPVIPAKPFSSSSEQHFRKVPALPSKLPPKPL 197


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 335 IRPSEHLAIVERSRERRPPPLVPSVTVVHGP 427
           I  SE L  VE+S   +PP  +PS +    P
Sbjct: 648 IASSEALPQVEKSNSDQPPVAIPSTSKTGSP 678


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 347 EHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPV 466
           E LA ++ +R     P V +    H P PSLP   P  PV
Sbjct: 235 EDLASLQHTRPLSTKPNVVN-GATHSPSPSLPFKTPLLPV 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,899
Number of Sequences: 5004
Number of extensions: 28541
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)