Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10n02
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0675 + 27183826-27184443 33 0.21
11_07_0007 - 27262229-27262638,27263252-27263312 31 1.1
09_02_0274 + 6611555-6611615,6612229-6612638 31 1.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 1.1
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 30 1.5
08_02_1256 + 25645085-25645396 29 3.4
07_03_1156 - 24416835-24417461 29 4.5
07_01_0037 + 301864-302349 29 4.5
06_03_0219 - 18227559-18227858,18227864-18228340 29 4.5
04_04_0592 + 26477974-26479311 29 4.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.5
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 28 5.9
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 28 5.9
03_06_0188 + 32212297-32212746 28 5.9
03_01_0515 - 3864796-3865425 28 7.8
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 28 7.8
>04_04_0675 + 27183826-27184443
Length = 205
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 368 RSRERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
RS+ RRP PL+ ++ ++ GP PS + P P
Sbjct: 78 RSKRRRPCPLLDAIDLLDGPSPSASPSQSPSP 109
>11_07_0007 - 27262229-27262638,27263252-27263312
Length = 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 462 GCGGKADGSDGLGPCTTVTEGTSGGGRRSL 373
G GG+ G G G + G+SGGGRRSL
Sbjct: 110 GGGGRGGGLSGRGHGSGGAGGSSGGGRRSL 139
>09_02_0274 + 6611555-6611615,6612229-6612638
Length = 156
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 462 GCGGKADGSDGLGPCTTVTEGTSGGGRRSL 373
G GG+ G G G + G+SGGGRRSL
Sbjct: 110 GGGGRGGGLSGRGHGSGGAGGSSGGGRRSL 139
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQP 463
PPPL PS+ P P LPS PPQP
Sbjct: 1172 PPPLSPSLPPPPPP-PPLPSGPPPQP 1196
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 341 PSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPP 457
PSE ++RS ER P P +T PRPSL LPP
Sbjct: 17 PSERSMQLDRSPERATPLPSPDMTPPAAPRPSL--QLPP 53
>08_02_1256 + 25645085-25645396
Length = 103
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 332 LIRPSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQ 460
L R HLAI S ++ PPP P P PS P PPQ
Sbjct: 44 LARTQAHLAIAVASSQQPPPPPPPP------PLPSPPPPPPPQ 80
>07_03_1156 - 24416835-24417461
Length = 208
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 341 PSEHLAIVERSRERRPP-PLVPSVTVVHGPRPSLPS----ALPPQPV 466
P H A+ E + PP P+VP + P P++P PP PV
Sbjct: 77 PPPHPAVPELPKHEEPPHPVVPELPKPEVPHPAVPELPKHEEPPHPV 123
>07_01_0037 + 301864-302349
Length = 161
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 465 TGCGGKADGSDGLGPCTTVTEGTSGGGRRS 376
+G GG ADG+ G G + G GGG R+
Sbjct: 15 SGAGGGADGNAGGGVTSAGAAGGGGGGTRA 44
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 350 HLAIVERSRER-RPPPLVPSVTVVHGPR-PSLPSALPPQP 463
HL + S R RPPP + + V P PS P A PP P
Sbjct: 63 HLPVALLSLPRCRPPPAACAASTVRRPAAPSPPPASPPPP 102
>04_04_0592 + 26477974-26479311
Length = 445
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 386 PPPLVPSVTVVHGPRPSLPSALPP 457
PPP P+ T P P LP PP
Sbjct: 86 PPPPTPTTTTTPTPTPPLPPPAPP 109
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 386 PPPLVPSVTVVHGPRPSLPSALPP 457
PPPL PS HG P P LPP
Sbjct: 287 PPPLPPSHHHHHGHHPPPPHPLPP 310
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 282 LAPTRTRRPSACRPPRGSSGRPN 350
++PT + P RP RG GRPN
Sbjct: 479 ISPTPQQGPKGSRPSRGLRGRPN 501
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 353 LAIVERSRERRPPPLVPSVTVVHGPRPSLPSAL 451
+A +E+ R ++ PS+TV+ GP+P P+ L
Sbjct: 197 IATIEK-RGKKDKDKKPSITVIQGPKPGKPTDL 228
>03_06_0188 + 32212297-32212746
Length = 149
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 392 PLVPSVTVVHGPRPSLPSALPPQP 463
P S TV P+P +PS +PP P
Sbjct: 126 PPASSTTVQEDPQPPMPSVVPPVP 149
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 377 ERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
E PPPL P +V P P L P P
Sbjct: 45 EASPPPLAPPPSVTSSPPPPAAGPLMPPP 73
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 380 RRPPPLVPSVTVVHGPRPSLPSALP 454
RRPPPL P++ + P P P P
Sbjct: 24 RRPPPLPPAIIIHKDPPPPPPPRQP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,668
Number of Sequences: 37544
Number of extensions: 225248
Number of successful extensions: 1484
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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