Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n02
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   4.5  
SB_44473| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   28   7.9  
SB_25755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   7.9  

>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 338 RPSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           +PS H           P P+ P+  V H P P  P  LPP P +
Sbjct: 706 QPSAHHQCQHDKHSCGPHPVPPTPLVQH-PEPEAPPQLPPPPPF 748


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 389 PPLVPSVTVVHGPRPSLPSALPPQPV 466
           PPL  +++V   P  S PS   PQPV
Sbjct: 716 PPLATALSVAQSPTVSRPSVAVPQPV 741


>SB_44473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 347 EHLAIVERSRERRPPPLVPSVTVVHG 424
           +HLA+ +RSR  + P LV  +  +HG
Sbjct: 11  DHLALAKRSRLEKVPNLVKELASIHG 36


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 365 ERSRERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           E  +E  PPPL P +   H   P + S+  P P
Sbjct: 156 EAPQEEEPPPLPPKIKKDHYQVPKVQSSTRPTP 188


>SB_25755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 401 PSVTVVHGPRPSLPSALPPQPVY 469
           P V ++ GP PS     PP P Y
Sbjct: 233 PKVNIIQGPPPSTRKFFPPIPAY 255


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 338 RPSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPV 466
           +P+E    +E S +   P +VP++   H P P     +PPQP+
Sbjct: 371 QPTEGPVELESSPQATEPYVVPNIVPPHQPAP----GIPPQPM 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,838
Number of Sequences: 59808
Number of extensions: 234774
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)