Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n02
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical p...    28   7.0  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    28   7.0  

>Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical
           protein Y57G11C.42 protein.
          Length = 661

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 332 LIRPSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPVYRHVT 481
           +IRP E L ++    E  PP       VV  P+P + S  P QP++   T
Sbjct: 203 IIRPPESLVVIGDYDEDEPPS---ENAVVDSPQPFVTSPPPAQPLFPQQT 249


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 383 RPPPLVPSVTVVHGPRPSLPSALP---PQPVYR 472
           RPPP      V+H PR +LPSA P   PQPV R
Sbjct: 631 RPPP------VLHSPRSALPSAGPFSSPQPVPR 657


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 383 RPPPLVPSVTVVHGPRPSLPSALP---PQPVYR 472
           RPPP      V+H PR +LPSA P   PQPV R
Sbjct: 631 RPPP------VLHSPRSALPSAGPFSSPQPVPR 657


>Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical
           protein F43D9.2 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 SRERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           S  + P P VPS T V  P P+ P  +PP P
Sbjct: 46  SAPQDPSPAVPS-TPVRVPYPTAPPPIPPAP 75


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 338 RPSEHLAIVERSRERRPPPLVPSVTVVHGP--RPSLPSALPPQ 460
           RP +   +VE  +E  P P+VP       P  +P  P  +PP+
Sbjct: 564 RPKKKKPVVEPEKEPTPEPVVPKAPKWIAPIKKPEEPIPMPPK 606


>Z78537-4|CAB01721.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 380 RRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           R P P +     +  P+P  P ALPP P
Sbjct: 54  RAPAPTIAQEKAIAVPQPQQPIALPPAP 81


>Z68014-14|CAA92030.1|  569|Caenorhabditis elegans Hypothetical
           protein W04G3.8 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 380 RRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           R P P +     +  P+P  P ALPP P
Sbjct: 54  RAPAPTIAQEKAIAVPQPQQPIALPPAP 81


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVYR 472
           PPP VP       P P  P   PP P  R
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRR 170


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +2

Query: 332 LIRPSEHLAIVERSRERRPPPL------VPSVTVVHGPRPSLPSALPPQP 463
           L +P++ L  V   R+   P L      VP V  + GP+P +P   PP P
Sbjct: 80  LFQPNQRLCRVGEHRDGIAPNLLRHQAFVPQVAPLAGPQPFVPPPPPPLP 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,171,253
Number of Sequences: 27780
Number of extensions: 176050
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)