Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n02
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.66 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 362  VERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPV 466
            V + +++R       + ++H     LP ALPPQ V
Sbjct: 1085 VSQQKQKRRMVKYGKLVMIHEENAPLPPALPPQVV 1119


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/17 (41%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 156 PCIILTGLSW-HWWITK 109
           PC++L  LSW  +W+ +
Sbjct: 223 PCVLLVVLSWVSFWLNR 239


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 350 HLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           HL + ++     PP    S T    P+ +L +AL  QP
Sbjct: 343 HLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMSQP 380


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 364  HYREVFGRPDEPRGGRHA 311
            HYR   G  DE +  RHA
Sbjct: 1440 HYRTAHGNLDELQLSRHA 1457


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 364  HYREVFGRPDEPRGGRHA 311
            HYR   G  DE +  RHA
Sbjct: 1436 HYRTAHGNLDELQLSRHA 1453


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 185 NRFCRANPTILASF*RVYL 129
           N+F R +P IL +  R+YL
Sbjct: 9   NKFYRISPQILKNDKRIYL 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,980
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)