Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n02
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    33   0.13 
At2g20760.1 68415.m02440 expressed protein                             32   0.30 
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    32   0.40 
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    31   0.93 
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   1.2  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   1.6  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   2.8  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   2.8  
At5g03040.1 68418.m00252 calmodulin-binding family protein simil...    28   5.0  
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         28   5.0  
At2g40060.1 68415.m04922 expressed protein                             28   5.0  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   6.6  
At4g12840.1 68417.m02012 expressed protein contains Pfam profile...    28   6.6  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   6.6  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    27   8.7  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   8.7  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    27   8.7  

>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 368 RSRERRPPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           ++R   PPP V   T V  P+P +PS  PP P+Y
Sbjct: 518 KNRRSPPPPKVED-TRVPPPQPPMPSPSPPSPIY 550


>At2g20760.1 68415.m02440 expressed protein
          Length = 338

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 362 VERSRERRPPPLVPSVTVVHGPRPSLPSAL 451
           +E+ R ++ P   PSV V+ GP+P  P+ L
Sbjct: 199 IEKKRGKKDPDKKPSVNVIQGPKPGKPTDL 228


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLP--SALPPQPVYRH 475
           PPP  PS ++   P PSLP  S+ PP P ++H
Sbjct: 44  PPPSKPSPSMSPPPSPSLPLSSSPPPPPPHKH 75


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 383 RPPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           +PPPL    T  + P   LP   PP P+Y
Sbjct: 404 KPPPLQKPPTPTYSPPIKLPPVKPPTPIY 432


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+      VH P P + S  PP P+Y
Sbjct: 782 PPPVHSPPPPVHSPPPPVHSPPPPSPIY 809



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+      VH P P  P   PP PV+
Sbjct: 789 PPPVHSPPPPVHSPPPPSPIYSPPPPVF 816


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP  P    V+ P P  P   PP PVY
Sbjct: 453 PPPPPPPPPPVYSPPPPPPPPPPPPPVY 480



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 368 RSRERRPPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           RS   RPP + P       P PSLPS  PP P++
Sbjct: 390 RSVSPRPPVVTPL------PPPSLPSPPPPAPIF 417


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+      VH P P + S  PP PV+
Sbjct: 576 PPPVYSPPPPVHSPPPPVHSPPPPAPVH 603



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 386 PPPL--VPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+   P    VH P P + S  PP PVY
Sbjct: 590 PPPVHSPPPPAPVHSPPPPVHSPPPPPPVY 619



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+      VH P P  P   PP PV+
Sbjct: 583 PPPVHSPPPPVHSPPPPAPVHSPPPPVH 610


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPP 457
           PPP  P   + + P+P  P  LPP
Sbjct: 683 PPPPPPKANISNAPKPPAPPPLPP 706


>At5g03040.1 68418.m00252 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 291

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 IVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQPVYR 472
           IVER+R+  PP    +V V     P +PS+  P  V R
Sbjct: 65  IVERNRDLSPPSTADAVNVTATDVPVVPSSSAPGVVRR 102


>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 383 RPPPLVPSVTVVHGPRPSLPSALPPQP 463
           RPPP++P      GPRP  P    PQP
Sbjct: 45  RPPPMMPG----SGPRPPPPFGQSPQP 67


>At2g40060.1 68415.m04922 expressed protein
          Length = 258

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 RSRERRPPPLVPSVTVVHGPRPSLPSAL 451
           R ++ +  P  P+V+V+ GP+P  P+ L
Sbjct: 183 RGKKEQQDPKKPTVSVIQGPKPGKPTDL 210


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 377  ERRPPPLVPSVTVVHGPRPSL-PSALPPQP 463
            +  PPPL P       P P L PS+LPP P
Sbjct: 1066 QESPPPLPPLPPSPPPPSPPLPPSSLPPPP 1095


>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 413

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 559 YTDSLSNVPLPFPYGLKMKICT*KSLSTLQEMLKK 663
           YT  LS + L F YG+K+ + T   L  + ++LKK
Sbjct: 186 YTRILSQLILTFFYGMKISVLTILMLEGMFQLLKK 220


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 386 PPPLVPSVTVVHGPRPSLPSALPPQPVY 469
           PPP+      VH P P + S  PP PV+
Sbjct: 596 PPPVHSPPPPVHSPPPPVYSPPPPPPVH 623


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 341 PSEHLAIVERSRERRPPPLVPSVTVVHGPRPSLPSALPPQP 463
           P +H  + +      P P  P   +VH   P  P   PP P
Sbjct: 697 PMQHSTVTKVPPPPPPAPPAPPTPIVHTSSPPPPPPPPPPP 737


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +2

Query: 386 PPPLV----PSVTVVHGPRPSLPSALPPQP 463
           PPP V    P   V+  P PS P+  PP P
Sbjct: 80  PPPTVASSPPPPVVIASPPPSTPATTPPAP 109


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 377 ERRPPPLVPSVTVVHGPRPSLPSALPP 457
           E R  P+ P V  V+GP PSL   LPP
Sbjct: 203 EMRAAPMPPRVVQVNGPGPSL-HQLPP 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,790
Number of Sequences: 28952
Number of extensions: 161233
Number of successful extensions: 833
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)