Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n01
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    30   1.7  
12_02_0908 - 24214221-24215933                                         29   2.9  
02_03_0360 + 18104948-18106159                                         29   5.1  
10_01_0252 + 2646074-2646430,2646476-2648158                           28   6.8  
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176           28   6.8  
01_06_0723 + 31501900-31502808,31502846-31503295                       28   6.8  
01_07_0116 + 41168750-41170054                                         28   9.0  
01_07_0114 + 41161923-41163251                                         28   9.0  

>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
            43196512-43196589,43196664-43197727,43197813-43198503,
            43198743-43199541,43200010-43200158,43200159-43200286,
            43200389-43200494,43200835-43200843,43201332-43201821,
            43201896-43202554,43203759-43203851,43204044-43204196,
            43205092-43205194,43205376-43205467,43206229-43206306,
            43206987-43207049,43207339-43207512
          Length = 1902

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -3

Query: 511  FISNVDSPWSPPSFSFTHLLCNNSLLSAINKYSQDEDNNYSDDHNNGESNNSCY 350
            F S  D   S    SFT   C+  LL  ++++SQ +D+ Y+DD+ +   N S Y
Sbjct: 1719 FTSLRDRSLSSSIESFTRAWCSPPLL--LDEFSQVKDSLYADDNFSVSVNRSAY 1770


>12_02_0908 - 24214221-24215933
          Length = 570

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 591 GIVDSASAGGRLMPVASMLCAILTPSFSFRTLI 493
           G VD A  GG  MP+A+ L A+  P    +T++
Sbjct: 534 GAVDMAEGGGLTMPMATPLAAVCRPREFVKTVV 566


>02_03_0360 + 18104948-18106159
          Length = 403

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 442 SLLSAINKYSQDEDNNYSDDHNNGESNNSC 353
           S+L A+NK    ED+N  D+ ++G     C
Sbjct: 267 SILVAVNKNGDHEDDNDGDEEDDGGGRGEC 296


>10_01_0252 + 2646074-2646430,2646476-2648158
          Length = 679

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 499 VDSPWSPPSFSFTHLLCNNSLLSAINKYSQDED 401
           ++ PW+  S S   L+ +NSL++ I K +++ D
Sbjct: 165 IEKPWALRSASINMLVSSNSLITKIEKSNEEGD 197


>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
          Length = 427

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 424 NKYSQDEDNNYSDDHNNGESNNSCYRQRGNFFCYHDLLG 308
           N  + + DN+ +D++N+  SNN  Y   G    Y DL+G
Sbjct: 186 NNNNNNNDNDNNDNNNSNSSNNGMY--FGEVDEYFDLVG 222


>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 544 GDW-HKSTTGRSTIDYTLKKCVQFKIEWFACKTQRSLETNNRLVSPYVITIALSTK 708
           G+W  K   G+    + +K     K+ WF  K+   L T  +  SP+   + L TK
Sbjct: 363 GEWVRKGGIGQLRRQFKIKSADASKLRWFCEKSCTLLFTLGKGSSPWTFALNLGTK 418


>01_07_0116 + 41168750-41170054
          Length = 434

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2   SGRRASQRCAC-AYVLAPLTDKC 67
           SGR A  RCAC A+   P+T +C
Sbjct: 107 SGREAGSRCACTAHPFNPVTGEC 129


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2   SGRRASQRCAC-AYVLAPLTDKC 67
           SGR A  RCAC A+   P+T +C
Sbjct: 108 SGREAGSRCACTAHPFNPVTGEC 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,044
Number of Sequences: 37544
Number of extensions: 344070
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)