Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10n01
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14180.1 68416.m01792 expressed protein similar to 6b-interac...    32   0.46 
At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase fa...    30   1.9  
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ...    29   3.2  
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ...    29   3.2  
At5g38490.1 68418.m04652 hypothetical protein contains Pfam prof...    28   7.5  
At5g53790.1 68418.m06684 hypothetical protein contains Pfam prof...    27   9.9  

>At3g14180.1 68416.m01792 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 443

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 431 RQQRVIAKQMGEAKRWRAPRRINVRNENDGVSIAHNMEATGISLPP 568
           +QQ ++ K+  E+KRWR  +R N  +++D  S A   + +G SLPP
Sbjct: 283 QQQGMMVKRCSESKRWRFRKR-NA-SDSDSESEAAMSDDSGDSLPP 326


>At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to 55 kDa type II
           phosphatidylinositol 4-kinase [Rattus norvegicus]
           GI:13660755; contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 533

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 475 SFSFTHLLCNNSLLSAINKYSQDEDNNYSDDHNNGESNNSC 353
           S S   +LCN +  SA++    D+D++YS + N  E+   C
Sbjct: 373 SSSVLEILCNKAKASAVS--GSDDDDDYSSEWNEVEAELEC 411


>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 369

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 448 NNSLLSAINKYSQDEDNNYSDDHNNGESNNSCYRQRGNF 332
           +N  LS ++   Q  DNN ++++NN  +NN+ +R    F
Sbjct: 246 SNCALSLLSNPHQPHDNN-NNNNNNNNNNNNTWRASSGF 283


>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 375

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 448 NNSLLSAINKYSQDEDNNYSDDHNNGESNNSCYRQRGNF 332
           +N  LS ++   Q  DNN ++++NN  +NN+ +R    F
Sbjct: 246 SNCALSLLSNPHQPHDNN-NNNNNNNNNNNNTWRASSGF 283


>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 514 IFISNVDSPWSPPSFSFTHLLCNNSLLSAINKYSQ-DEDNNYSDDHNNG 371
           +F S+V+S  S     F  L+ N+ L  A  +  Q DEDN+  DD N G
Sbjct: 244 LFKSDVNSNLSRLLMPFQKLIRNDFLTPAECRAMQKDEDNDEEDDENIG 292


>At5g53790.1 68418.m06684 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
 Frame = -3

Query: 523 NSIIFISNVDSPWSPPSFSFTHL---LCNNSLLSAI--NKYSQDEDNNY 392
           ++IIF+++V +PWS  S + T     L +N + +++  +  S D+DN+Y
Sbjct: 95  DTIIFLTDVFNPWSSESSTRTITLPPLVSNGIKASVSLSTPSPDDDNDY 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,239
Number of Sequences: 28952
Number of extensions: 286557
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)