Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m24
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            43   2e-04
SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)            41   0.001
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   0.75 
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 31   0.99 
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)            29   5.3  
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)             29   5.3  
SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3)                    28   7.0  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +3

Query: 318 DQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNV 497
           D  S  LS P  ++L  EV+  + +   +  +LLQ+ADDFI+  +NS+  +AKHR +  +
Sbjct: 3   DHQSVCLSDPH-EQLGYEVEDVIDVSVHLS-LLLQVADDFIENVVNSSAQIAKHRKSNTL 60

Query: 498 E 500
           E
Sbjct: 61  E 61



 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 526 NVSGTCGYQVLETMNCGHTREQQLQK 603
           NV+GTCGY  LE  N G T++  L++
Sbjct: 62  NVAGTCGYPDLEQTNSGRTKKLLLRR 87


>SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)
          Length = 90

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/37 (43%), Positives = 29/37 (78%)
 Frame = +3

Query: 321 QSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLAD 431
           Q +Q+L++ R+QEL+ E+DP  Q+D+EVE++  ++ D
Sbjct: 12  QPTQVLTKRRIQELLHEIDPREQMDDEVEDLGYEVED 48


>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 159 PTIGTVGQGAIQYVNNPMQSPQLQN---TSIQGSP-SQHSPMGTQSQVAKVGQGGAGDQS 326
           P+I T G G+IQYV  P+  PQ        I  SP +Q S M T SQ   +     G + 
Sbjct: 542 PSIVTTGTGSIQYVIKPVIKPQSHRYLPMPISVSPGTQSSQMATSSQATVISTASGGIRY 601

Query: 327 SQLLSRP 347
           + L   P
Sbjct: 602 TSLTQSP 608


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = +3

Query: 333  LLSRPRLQELVREVDPTVQLDEEVEE---MLLQLADDFIDTTLNSACALAKHR--HAPNV 497
            L  RP + + V E+   V L E+ EE   + LQ     +  T+ +    A +   + PNV
Sbjct: 949  LTQRPAVAKAVSELKELVSLGEQWEEKAKLCLQARPRHVMATVEAIVKEASNVPVYLPNV 1008

Query: 498  ELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMALIR 632
                  L   ++W+  +    NDE  PY     T   R R   +R
Sbjct: 1009 SALKESLRKAKEWSDKVDQVQNDEYYPYLDVLETLVMRGRPIPVR 1053


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = +3

Query: 141 AQAANMPTI--GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS-QVAKVGQGG 311
           A+ A++P    G      +   ++P  S    +TSI GSP   SPM     + ++ G+  
Sbjct: 155 ARPASLPVSVPGVAMAATMTLADSPSSSHGSPHTSITGSPCP-SPMPRDDYEPSESGESE 213

Query: 312 AGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADD 434
             D   ++LS P      ++V+PT + D+E ++M  +L  D
Sbjct: 214 QDDSEVKMLSPP------KKVEPTAE-DQEFQQMFERLMVD 247


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 168 GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 284
           GT+   A QY+  PM SP     ++ GSP    P G QS
Sbjct: 164 GTMKSPAQQYLYTPMYSPTQSAPTLSGSPLTVIPPGPQS 202


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +3

Query: 144 QAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGS----PSQHSPMGTQSQ----VAKV 299
           Q    P   T  QG  Q  + P+Q  Q Q T  QG+    PSQ  P GTQ Q    +   
Sbjct: 480 QQVIQPVWPTQPQGTQQQASQPIQPTQPQGTQQQGTLPIYPSQ--PQGTQQQGTLPIYPS 537

Query: 300 GQGGAGDQSSQLLSRPRLQELVREVDPTVQ 389
              G   Q +Q + +P  Q   + V PT+Q
Sbjct: 538 QPQGTQQQGTQPM-KP-TQPWTQPVQPTIQ 565


>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 126 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ 281
           +NNSL Q AN P      +   Q  NNP+ +P+ +  +       + P G Q
Sbjct: 45  ANNSLTQQANNPLTQQANKSLTQQANNPL-TPKGKQPNQPTDQQPNKPTGQQ 95


>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 547 IHMFH*RSKCSCTSLSSTFGACLCLARAQA 458
           IH+++   K  C+  +++ GACLCL  A A
Sbjct: 105 IHVYNQAIKVYCSQGNTSLGACLCLELADA 134


>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 315 GDQSSQLLSRPRLQELVREVDPTVQ-----LDEEVEEMLLQLADDFIDTTLNSACALAKH 479
           GD++SQ    P LQ L   V  TVQ     L E V  MLL++  D ++  L+S   L +H
Sbjct: 68  GDENSQ--RTPDLQSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEH 125

Query: 480 RH 485
            H
Sbjct: 126 IH 127


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 375 DPTVQLDEEVEEMLLQLADDFIDTTLNSACAL 470
           D  V + E +E+  + +A   I TTLNS CA+
Sbjct: 449 DDRVAIHEAMEQQTISIAKAGITTTLNSRCAV 480


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 376  TQQCSSMKKWRKCYCSLQMTSSTLH*IQLALLLSTGMH 489
            T  C+ ++ W   YC+ ++T+  L   Q+ L L++G H
Sbjct: 961  TATCNCIRGWTGTYCNGKITTLALQTPQIYLPLTSGAH 998


>SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -3

Query: 323 LVTSSALANFCYL*LGPHRAVLRRRTLNRSVLKLRTL--HGIIN 198
           ++ ++A++ +  + LG HR +  RRT + S+  L+T+  H +IN
Sbjct: 42  MIGATAISTYTLVLLGRHRDLHYRRTWDMSITLLKTIDTHHVIN 85


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 168 GTVGQGAIQYVNNP--MQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLS 341
           GTVG    Q  + P  +Q    QN  +QG P    PMG  + +     G  G Q  Q+  
Sbjct: 544 GTVGPRGPQGFSGPRGLQGTPGQN-GLQGPPGPQGPMGVNNSIGP--PGPPGPQGPQVYF 600

Query: 342 RPRLQELVRE 371
           R  +  L R+
Sbjct: 601 RRAVGNLNRQ 610


>SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 220 GLCMGLLTYCIAP*PTVPIVGIFAACARELLDIYTFNTTNEKTSRIKTIIF 68
           G CM  +  C+    T+P   + AA  R L  +++  TT EK  +++  IF
Sbjct: 161 GYCMEDIIKCLQVPLTMPAKEVRAAGVRALRHLFSDKTTFEKMLKVRMDIF 211


>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 264 SPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQ 422
           SP  + S   K+G+GG   +  +   + R Q      DPT  +D+E E+ LLQ
Sbjct: 489 SPCSSGSSGCKLGKGGKKRRGERARQKMRNQRHSPPGDPTELMDDE-EKRLLQ 540


>SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3)
          Length = 302

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 48  SEISKCLKIIVFIRDVFSFVVLKV*MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQL 227
           +++ K L++   +R     VV+    S  S         +G +GQ   QY  NP   P+ 
Sbjct: 180 TQVKKALELYEQLRQRMGVVVIGPSGSGKSTIWRLLRLALGKIGQTVKQYTMNPKAMPRT 239

Query: 228 QNTSI 242
           Q  ++
Sbjct: 240 QGVTL 244


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/84 (25%), Positives = 29/84 (34%)
 Frame = +3

Query: 126 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 305
           +N    Q  N PT     Q   Q  N P   P  Q T+    P+      T     +   
Sbjct: 221 TNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTN 280

Query: 306 GGAGDQSSQLLSRPRLQELVREVD 377
             A  Q++   S+P  Q   R +D
Sbjct: 281 QPANLQTTHAPSQPADQPTNRSLD 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,164,935
Number of Sequences: 59808
Number of extensions: 381778
Number of successful extensions: 922
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)