Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m24
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10070.1 68416.m01207 transcription initiation factor IID (TF...   108   3e-24
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...   105   3e-23
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...   105   3e-23
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    29   2.5  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   2.5  
At1g67140.1 68414.m07638 expressed protein                             29   2.5  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    29   4.3  
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ...    28   7.5  
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim...    27   9.9  
At1g56600.1 68414.m06509 galactinol synthase, putative similar t...    27   9.9  

>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score =  108 bits (260), Expect = 3e-24
 Identities = 50/156 (32%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
 Frame = +3

Query: 180 QGAIQYVNNPMQSPQLQNTSIQGS--PSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL 353
           Q  + + + P +   L N  +     PSQ  P+      AK           ++L +  +
Sbjct: 347 QQPLAHPHQPTRVQGLVNQKVTSPVMPSQ-PPVAQPGNHAKTVSAETEPSDDRILGKRSI 405

Query: 354 QELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQ 533
            EL++++DP+ +LD EVE++L  +A+DF+++     C+LAKHR +  +E +D+ LH+ER 
Sbjct: 406 HELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAKDILLHVERN 465

Query: 534 WNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSI 641
           WN+  PGF +DE + +++   T+ H++R+A I+KS+
Sbjct: 466 WNIRPPGFSSDEFKTFRKPLTTDIHKERLAAIKKSV 501


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
 Frame = +3

Query: 198 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 359
           +N    SP++      ++ S+ GS  + +  GT +      QG   + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535

Query: 360 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 539
           LV +VD   +LD +VE++LL++ADDFID+  + AC+LAKHR +  +E +D+ LHLE+  +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595

Query: 540 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 632
           + IPGF +++ R  K    T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
 Frame = +3

Query: 198 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 359
           +N    SP++      ++ S+ GS  + +  GT +      QG   + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535

Query: 360 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 539
           LV +VD   +LD +VE++LL++ADDFID+  + AC+LAKHR +  +E +D+ LHLE+  +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595

Query: 540 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 632
           + IPGF +++ R  K    T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
            ubiquitin-transferase family protein /
            armadillo/beta-catenin-like repeat-containing protein
            similar to SP|Q14669 Thyroid receptor interacting protein
            12 (TRIP12) {Homo sapiens}; contains Pfam profiles
            PF00632: HECT-domain (ubiquitin-transferase), PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +3

Query: 213  QSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL--QELVREVDPTV 386
            QS QLQ+TSI       SPM   S+ +   Q     Q SQ+  + +L  Q+     + + 
Sbjct: 822  QSSQLQSTSISCQAESSSPMEIDSESSDASQ----LQGSQVEDQTQLPGQQNASSSETSS 877

Query: 387  QLDEEVEEMLLQLADDFIDTTLNSACALAKHR 482
            + ++ V  +L +L    +D +L    A+  H+
Sbjct: 878  EKEDAVPRLLFRLEGLELDRSLTVYQAILLHK 909


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 225 LQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQEL 362
           L+N SI GS    SP+     +     G +G  SS +LS  RL EL
Sbjct: 106 LENNSISGSIPDLSPLVNLKTLTLSKNGFSGTLSSSILSLRRLTEL 151


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 336  LSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNS 458
            LS   L+ LV E DP   +DE++E+ L Q+ D+  D+ + +
Sbjct: 982  LSVSTLRHLV-EKDPVSVIDEQIEDNLFQMLDEETDSEIGN 1021


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +3

Query: 138 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAG 317
           L   A    I   G+G +    NP  + + QN+ I+   ++       S  + VG G   
Sbjct: 677 LTDLAGKEIISVHGEGIVPATTNPRFAIKCQNSQIESDTTEDPSRSKNSSSSGVGFGSPA 736

Query: 318 DQSS 329
             SS
Sbjct: 737 SSSS 740


>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
           GYF domain-containing protein contains Pfam domains
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF02213: GYF domain
          Length = 659

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 126 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPM---GTQSQVA- 293
           S  S     ++P +     GA+Q    P+ +P   N S+  S + HSP    G QS  + 
Sbjct: 350 SGQSQTSRIDIPVVVN-SAGALQPQTYPIPTPDPINVSVNHSATLHSPTPAGGKQSWGSM 408

Query: 294 KVGQGGAGDQSSQ 332
           +   GG+   SSQ
Sbjct: 409 QTDHGGSNTPSSQ 421


>At1g59700.1 68414.m06716 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 234

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 348 RLQELVREVDPTVQLDEEVEEMLLQLADDFI 440
           R+  + +  D   +  EEVEE LLQL D F+
Sbjct: 115 RMAAITKSEDAKAKAMEEVEEGLLQLEDAFV 145


>At1g56600.1 68414.m06509 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/45 (22%), Positives = 27/45 (60%)
 Frame = +3

Query: 492 NVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMAL 626
           N++  D+++ +++ W+++     NDE   YK   + ++H+++  L
Sbjct: 274 NMDREDIKMLVKKWWDIY-----NDESLDYKNVVIGDSHKKQQTL 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,642
Number of Sequences: 28952
Number of extensions: 263873
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)