Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m23
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.84 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 427 DSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDF-STAKQYAEQLGIPF---LE 594
           +++  VK+W + +D YA +N    +V     L T+      +T K Y     +PF     
Sbjct: 270 ETYELVKEWRDFVDNYAEENKRDEIV-----LLTEAYSSLENTLKYYEVGSNVPFNFKFI 324

Query: 595 TSAKNSTNVEQ 627
           T A +S+  EQ
Sbjct: 325 TDANSSSTPEQ 335


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 394 HVLLCSMMR*WF*TAPVQLCPIFVTLLSCH 305
           H ++   M        +Q+CPI++   S H
Sbjct: 111 HAIIACQMEFQLYPMDIQICPIYIESFSYH 140


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 585  VPRDVSEELYE 617
            VPRDVSE +Y+
Sbjct: 1265 VPRDVSEGIYD 1275


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 253 SRCTYHQRILATDMISQLQSHQSGV 179
           S C     I +TD+I   Q H  GV
Sbjct: 520 SACRPRHEIRSTDVIPGTQEHVCGV 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,430
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)