Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m22
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)              109   3e-24
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   33   0.15 
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)                   32   0.35 
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.4  
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)                   29   3.3  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   5.7  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     27   9.9  
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score =  109 bits (261), Expect = 3e-24
 Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
 Frame = +3

Query: 192 VMKLMEEKDRIEHLIRGHYAVLASN-NVGLKGSLVDELGYPRDDIDVYEVRHARHKIICL 368
           V +L+ EKD IE  I+    VLAS  NVG++ +L+D  GYPRDDIDVY VR AR++IICL
Sbjct: 9   VKQLIAEKDAIEQEIKEFQDVLASQKNVGMEENLIDAEGYPRDDIDVYTVRIARNRIICL 68

Query: 369 QNDHKKVMQLIERGIAKVYEDLIDSP---GIDS------EEINSCLNGYPVFKKDETVND 521
           QNDHK  M+ IE G+ KV+    ++    G +       E++N       +  +   VN 
Sbjct: 69  QNDHKAKMKEIEEGLHKVHAKAKENKRENGTEQASTGNFEKLNEDSCPIDILSQSRDVNL 128

Query: 522 PTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFK 635
             F  +  V   SPA +AGL   D +++FGS++ +NF+
Sbjct: 129 TPFLRVESVTPHSPAAKAGLEVGDNILKFGSLSAQNFQ 166


>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
 Frame = +3

Query: 12  SAFSKQKSIHLIRSANLQLQ*LYPSNIIDFSTNLLSKASVN*RLQAKMVNYKIDPATREF 191
           SA   QK  +    AN + Q +    ++   TNL+ +     +   + V  +I   T E 
Sbjct: 96  SAVPLQKPNNRFIQANEE-QNIKADKMLTMHTNLMKRYQKELKTNTEQVE-QIATLTLEV 153

Query: 192 V---MKLMEEKDRIEHLIRGHYAVLASNNVGLKGSLVDELGYPRDDI--DVYEVRHARHK 356
           V    KL + K +IE L +   A+L            D +   R D+  D+ ++   R K
Sbjct: 154 VELKKKLEDAKKKIEELQKEKEAILLRTKATRTR---DRVTPSRQDLLADMAKITRERDK 210

Query: 357 IICLQNDHKKVMQLIERGIAKVYEDL 434
           ++  +N++K  ++L++RG  +  EDL
Sbjct: 211 LLKEKNNYKDELKLLDRGFFEEVEDL 236


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -2

Query: 127 EAFDSRFVEKSIMLD-GYNYCNCKFADLIRCID---FCFENALQNY 2
           E  + ++VE+   ++ G  YC+  F D+++C+D   FC EN L NY
Sbjct: 356 EINEKQYVEQGQTIECGCCYCDVAFEDMVQCLDGHLFC-ENCLMNY 400


>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
          Length = 718

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 519 DPTFA-TISFVDKGSPAEEAGLRAHDELVQFGSVNYKNF 632
           D  FA  I  + +GSPAE A LR  DE+++    + +NF
Sbjct: 63  DEGFAPNIDSIAQGSPAERANLRIGDEILEVNGTSVENF 101


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 537 ISFVDKGSPAEEAGLRAHDELVQFGSVNYKN 629
           +  VDKGSPA +A L+  D +++   +N +N
Sbjct: 318 VRLVDKGSPAAQARLKPGDHILEINGLNVRN 348



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 546 VDKGSPAEEAGLRAHDELVQFGSVNYKN 629
           VDKGSPA +A L+  D +++   +N +N
Sbjct: 489 VDKGSPAAQARLKPGDHILEINGLNVRN 516


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 363 CLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINS 473
           C+ N H +  Q I +    VYE  ++SP + ++EINS
Sbjct: 307 CVMNHHPQHQQRIRQAYT-VYEKQVNSPRLPNDEINS 342


>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
          Length = 217

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 537 ISFVDKGSPAEEAGLRAHDELVQFGSVNYKNF 632
           ++FV K SPA   GLR  D+++Q    N   F
Sbjct: 68  VAFVHKDSPAALGGLRFGDQILQIDGENMAGF 99


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 423 YEDLIDSPGIDSEEINSCLNGYPVFKKDETV 515
           Y + +D  G+DS  I  CL  + VF+  + V
Sbjct: 227 YNEKLDFAGLDSNRIKECLLSFMVFEASQRV 257


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 423 YEDLIDSPGIDSEEINSCLNGYPVFKKDETV 515
           Y + +D  G+DS  I  CL  + VF+  + V
Sbjct: 202 YNEKLDFAGLDSNRIKECLLSFMVFEASQRV 232


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 KIICLQNDHKKVMQLIERGIAKVYEDL-IDSPGIDSEEINSCLN 482
           K+  L+N+H K+ Q  ER   KV +D+ +   G  + +I S LN
Sbjct: 534 KVRKLENEHDKICQTSERDEQKVSDDVSMTIEGSQNRDIPSNLN 577


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
 Frame = +3

Query: 198 KLMEEKDRIEHLIRGHYAV---LASNNVGLKGS------LVDELGYPRDDIDVYEVRHAR 350
           +++EEKDRI  +++   ++   L  N  GL+ S      LVD+L   R  +   E + A 
Sbjct: 412 QILEEKDRIREIVKEENSMVSDLTENIRGLESSRQELEELVDKLLEVRKKL---EEKVAE 468

Query: 351 HKIICLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINSCLNGY-PVFKKDETVNDPT 527
            K     N  +K     E+   +  E L+++ G   E+++  L+     FKK++  N+  
Sbjct: 469 LKEQLSNNQREKDNLTYEK---EELERLLEAEGTKMEDLSQLLSKMEEEFKKNKIENEAL 525

Query: 528 FATISFVDKGSPAEEAGLRAHDELVQ 605
              ++ +   SP E+   +   +L++
Sbjct: 526 KDELTKLTILSPNEDTSEQTTQQLIE 551


>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 137 KITSENG*LQNRPSYKRIRDEANGRKR*NRTFDSWS 244
           ++ SE     N+P YK +   +NG +R  R  DS S
Sbjct: 569 RVNSERAATPNKPVYKHVTFISNGLRRSQRVCDSLS 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,151
Number of Sequences: 59808
Number of extensions: 366600
Number of successful extensions: 779
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)