Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m22
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    53   2e-07
At3g01680.1 68416.m00099 expressed protein                             27   8.1  

>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 21/162 (12%)
 Frame = +3

Query: 195 MKLMEEKDRIEHLIRGHYAVLAS-NNVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQ 371
           M LM+++  +E  +      L +    GL G+L+D  G+PR+DID+  VR  R ++  L+
Sbjct: 11  MALMDKRTAMETEMNSIVERLCNPGGPGLSGNLIDSEGFPREDIDIPMVRTERRRLAELR 70

Query: 372 NDHKKVMQLIERGIAKVY-----------------EDLIDSPGIDSEEINSCLNGYPVFK 500
           ++H ++ + I   I  ++                 E  +    ++S   +   +G+ V  
Sbjct: 71  SEHGEITEKINVNIQILHSVRPTSRASSTKDSGPEETSLSGAAVNSLSASMQTSGFSVTS 130

Query: 501 KD---ETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSV 617
                + V    FA +  +++ SPA E GL+  D++++FG+V
Sbjct: 131 GPMDVDVVTSIPFAMVDEINESSPAAEGGLQLGDQVLKFGNV 172


>At3g01680.1 68416.m00099 expressed protein 
          Length = 740

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 366 LQNDHKKVMQLIE-RGIAKVYEDLIDSPGIDSEEINSCLNGYPVFKK 503
           +Q  H    + ++ RG+  + ED++D   +DSE+ N+ +   P   K
Sbjct: 47  IQQTHSPDAREVQVRGLLSLVEDILDRATLDSEDTNASMLPLPTEDK 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,638
Number of Sequences: 28952
Number of extensions: 253784
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)