Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m21
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.4  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   7.3  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +2

Query: 104 KNGTYICSAVILNTYWLATLSDCFDRAIISSYVTHKNLGNFAIRAGSSYNNK 259
           K   YI  AV L  ++LA++  C   AII  +  H N  NF++    SY  K
Sbjct: 62  KKHRYIYLAVCL--FFLASVLSC---AIIFRFYLHTNRENFSLFKNDSYKQK 108


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 440 VQ*VSKQSSMRGSQALLPDPDWADEPRPLAIQTPKGYQA*R 318
           VQ   KQ     +  L P+P   DEP  L+I+ P G +A R
Sbjct: 302 VQKKKKQYRAWLASNLPPEPSSEDEPARLSIRFPDGSRAVR 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,620
Number of Sequences: 5004
Number of extensions: 56345
Number of successful extensions: 167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)